Gene detail information of Glyur000194s00016345 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46370.2 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_003528802.1 | 0 | PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 isoform X1 [Glycine max] |
| COG | YP_003444757.1 | 4.00E-14 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|Q6I581|GH35_ORYSJ | 0 | Probable indole-3-acetic acid-amido synthetase GH3.5 |
| trEMBL | tr|K7MEW7|K7MEW7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03011.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00194 | 157970 | 162906 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000194s00016345.1 | PF03321.8 | GH3 | 14 | 394 | 9.40E-114 |
| Glyur000194s00016345.1 | PF03321.8 | GH3 | 395 | 535 | 6.00E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.754 |
| SRR1783600 | control | 9.595 |
| SRR1783602 | moderate drought stress | 11.550 |
| SRR1811619 | moderate drought stress | 11.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.331 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.107 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.340 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.095 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.325 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.329 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.109 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.925 |
| SRR2868004 | Drought Stress (root) | 55.096 |
| SRR2967015 | Control (root) | 45.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.460 |
| SRR9715740 | Leaf | 22.098 |
| SRR9715741 | Leaf | 37.776 |
| SRR9715739 | Root | 2.553 |
| SRR9715742 | Root | 3.935 |
| SRR9715743 | Root | 4.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.275 |
| SRR8749028 | MeJA induced 9h | 30.928 |
| SRR8749029 | MeJA induced 9h | 17.688 |
| SRR8749030 | Uninduced | 24.649 |
| SRR8749031 | Uninduced | 26.829 |
| SRR8749032 | Uninduced | 16.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.052 |
| SRR8400027 | Control - Root | 19.054 |