Gene detail

Gene detail information of Glyur000194s00016333.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24110.1	5.00E-38	WRKY DNA-binding protein 30
NR	KHN06293.1	1.96E-142	Putative WRKY transcription factor 41 [Glycine soja]
Swissprot	tr\|Q9FL62\|WRK30_ARATH	5.00E-46	Probable WRKY transcription factor 30
trEMBL	tr\|I1NCK2\|I1NCK2_SOYBN	3.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G44380.1}

Sequence

Transcript Sequence

>Glyur000194s00016333.1
AACTCACATAAACTTTTGGCCAGTCAAATCAACCTCTTTTCCTTCTCTTTTCTCTCCATATATACCCCTTTCCTCTCACCTTCATAGTTGGGCGAGCCCCTTTATTTGCCTATTTCACACAGTACACATTTCCACTCTCTATCGTCCATGCTTTTTATATCTCCTCTTACAAGCAGCAGCACATAACTCACCACATCCCAAACAATCCCACTCCAATTTCCCATGAATCTTCACTAGATACTTGAATGATCCATTTGGCATTTCCTTAGCTTACCACAATTGGCCTAAGTATTCCTATGTTCCTTTGCAATCCTTGATTGGCCAAATAATATATATAAACCAACCAGCCATATTCATTTGAGTCTGATAGCTGTGTGCATAAGCTGAACTCAATTAGGAAATGGGAGACACCATGAAGTGTGAACAAATTGGTCTCATTGGTGAGCTAATGCAAGGGAAGGAGCTGGCAAAGCAGCTCTGTGACCATCTGATCTCAGCATCATCATCATCATCATCCCATTTGACCAATGAAGAATTAATTGAGAAAATACTTGGGTCCTATGAGAAAGCACTTACCATGCTGAACTGGAAGGCTAATGTTGGACAAAGTAAGAGCAACAATGGNAGCCCCAGAAGTGAGGTTCAGGACTCAGATCAGTTCAAGCACAAAGCTGTCTTTAAGAAAAGAAAGACCATGAGTAAGTGGACAGAACAAGTGAAGGTGTGCTCAAGAACAGCACTTGAGGGGTCTTTGGATGATGGCTATAGCTGGAGAAAGTATGGGCAGAAGGAAATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGTTCACATAGAAATGTACAAGGGTGTCTAGCTACTAAGCAAGTGCAAAAGTCAGATGAAGACCCAATGATATATGTGATAACCTACACGGGAAGACACACGTGCACCCAAGCTAGTCATTATTTGAACAAGGCAATCCAATCAAAAACAAAGTTGTGCTTGGGAGAAAACAAACGCCAAAAGAATCAACCACAAGAAGAGAAAATAGAGCAACCCCAAGAGAAAATTTTCTCTTTTGGATCAGGGCCTGAAGTTAAAGTAGAGAACTTGGACAACAAGGAGGATATATTCCCATCATTTATCTTCCCTTCTCCATCCACAGGATCTGAAAACGAGGACGACAACAACAACAACAACAACAACAACATATTCTCTGAGACCATGATTGAAAACAACTTCATGGAATGCTTTTCTCCAGCATTCATATCTCCAGAGACCTCAGAATCAAACCTTTTCTGCTTGTCACCATGCCACTTAGGCCCAAGTGTGCAAACCTCAAAATCTGATTTCACAGAGATAGTTTCAGACCCAACTACTTCGGTGGCCAATTCCCCAATAGATTTGGACTTCCTTGTTGACATTGATTTCGACACGNATTTCCTTATCAACACACCAGAACTTTGCTATTGATCAGTTGTCCCACTTCCAAAGTTAACAGCAGCGTGCATTTTTGGTTTTTAATTGGAAGATTGCAAAAGTACGTTTNNACCTAAAGTAACTATAAAGTTCCTTTTNGACAAACGTATTTTTAGACCCCAAACGTATGTTTGTAACTGAAAATCAAACACGGCATAGTTTGTGTGTGCGGATTAACCGGTGAGTTTTGTAGATCCTGACTAGCAAAATTGAAGAGGGGAGGAAGACCACAGTCATCGAAATCATACTATTGAGTCCATAAATGAAAACAATGAAACTTCCCTCTCGTGCTAGTTAAGAGAGTTTTCGTGTACCTAGGCTGTAATGTGAAAATAATTTGTAACTTGTAGCTATAGTCTTTTGCGGTTTCCCACTTCAGATGTAATGTAACTTAGTCATCTGTTTTCTTCTGGCTCAAGCAGAGCAAGAAATTGTGAAATGAACGAATTTTAAGTTGTACCCCACATTTGTTGTCTAAAATTGTAATGAATGTATCATTTTACCATAGAAAAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00194	97685	101286	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000194s00016333.1	PF03106.10	WRKY	118	179	6.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.480
SRR1783600	control	2.533
SRR1783602	moderate drought stress	1.175
SRR1811619	moderate drought stress	1.134

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.082
DRR006520	Root Summer glycyrrhizin high producing strain	69.067
DRR006521	Root Winter glycyrrhizin high producing strain	0.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.053
DRR006523	Root Summer glycyrrhizin low producing strain	91.239
DRR006524	Root Summer glycyrrhizin low producing strain	91.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	100.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	100.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.251
SRR2868004	Drought Stress (root)	23.918
SRR2967015	Control (root)	15.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	206.533
SRR9715740	Leaf	269.095
SRR9715741	Leaf	191.463
SRR9715739	Root	14.638
SRR9715742	Root	51.379
SRR9715743	Root	42.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.088
SRR8749028	MeJA induced 9h	20.360
SRR8749029	MeJA induced 9h	36.704
SRR8749030	Uninduced	118.259
SRR8749031	Uninduced	59.190
SRR8749032	Uninduced	41.435

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.983
SRR8400027	Control - Root	79.853