Gene detail information of Glyur000194s00016329 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01050.1 | 3.00E-117 | thylakoid rhodanese-like |
| NR | XP_004516405.1 | 0 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic-like [Cicer arietinum] |
| COG | YP_004283765.1 | 5.00E-06 | hypothetical protein ACMV_15360 [Acidiphilium multivorum AIU301] |
| Swissprot | tr|Q9M158|STR4_ARATH | 3.00E-157 | Rhodanese-like domain-containing protein 4, chloroplastic (Precursor) |
| trEMBL | tr|B7FNA7|B7FNA7_MEDTR | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ86240.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00194 | 74979 | 80566 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.497 |
| SRR1783600 | control | 0.436 |
| SRR1783602 | moderate drought stress | 1.505 |
| SRR1811619 | moderate drought stress | 1.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.548 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.588 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.233 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.178 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.927 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.940 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 199.281 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 198.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.253 |
| SRR2868004 | Drought Stress (root) | 12.705 |
| SRR2967015 | Control (root) | 3.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 156.344 |
| SRR9715740 | Leaf | 178.541 |
| SRR9715741 | Leaf | 136.686 |
| SRR9715739 | Root | 0.021 |
| SRR9715742 | Root | 1.001 |
| SRR9715743 | Root | 0.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.054 |
| SRR8749028 | MeJA induced 9h | 10.372 |
| SRR8749029 | MeJA induced 9h | 8.708 |
| SRR8749030 | Uninduced | 4.793 |
| SRR8749031 | Uninduced | 2.421 |
| SRR8749032 | Uninduced | 12.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.400 |
| SRR8400027 | Control - Root | 6.213 |