Gene detail

Gene detail information of Glyur000194s00016325

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G01030.1	pentatricopeptide (PPR) repeat-containing protein
NR	XP_003529895.2	PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Glycine max]
Swissprot	tr\|Q9SV26\|PP297_ARATH	Pentatricopeptide repeat-containing protein At4g01030, mitochondrial (Precursor)
trEMBL	tr\|A0A072TN87\|A0A072TN87_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH18681.1}

Sequence

Transcript Sequence

>Glyur000194s00016325.1
ATGACATTTTGCATCTTCTCTCAGCACCAAAGCTTTATTATGGATAAGCTAGTTCCTTTTCACCATCTTAACCCTTATTCTGTTCAGAACCCACAAACCCACAGCATCCCACCACCCAGAAGCCATTCACCCCCCTCAATTTCTCCTGGGATCCCGGATACCCACCTCTTTTCTTCTTCATTTTCCTCCCCAAAATTTTCTCCATGCTTTCAGTACCCTTTGGATGAGTTGGGTAAGGTAAGGACTTTGAATTCTGTCAGGGAACTGCATGCCCAGATGTTGAAAATGNCAAAAAATGGTAGCTTGACAACAATGGATGGAAGCATGATGAGATACTATTTGGAGTTTGGGGATTTTGTGTCAGCAATAAAGGTGTTCTTTGTGGGTTTTTCAAGGAACTNTCTTCTCTGGAGTTCTTTTCTGGAGGAATTTGGGAGTTTTGGAGGTGACCCATTTGAGATTCTGAAGGTCTTCAAGGAATTGCATGATAAAGGAGTGGAATTTGATAGCAAGGCTCTCACTGTTGCTCTGAAGGTTTGCTTGGCTTTGAGGGATTTGTGGGTTGGGTTGGAGATTCATGCTTGTTTGGTCAAGAGAGGNTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATTTGTATGANAAGTGCTGGGGCATAGATAGTGCAAATCAAGTGTTTCATGAGACACCACACCAAGAAGATTTCTTGTGGAATACAATAGTTATGGCAAACTTGAGGAGTGAGAGGTGGGGGAATGCCTTAGAACTGTTCCGTGGCATGCAGTTAGCTTCTGCCAAAGCCACTCTTGGCACCATTGTCAAGATGCTGCAAGCATGTGGGAAATTAAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGCTTTGAGGCTTGGACTAGTGTCAAATACTTCAGTTTGCAATTCCATAATTAGCATGTACTCTAGAAACAGTAGACTCAAACTAGCTAGAGCAGTTTTTGATGCGATGGAGGATCGTAACTTATCATCCTGGAACTCGATAATTTCAAGTTATGTGGTCGACGGCCGCTTGAATGATGCCTGGGGTATCTTCAAGGAAATGGAGTATTCTAGCATTAAACCAGACATTATAACTTGGAATTCTCTTTTGTCAGGCTATCTTCTTCAGGGGTCATTTGAAATGGTTCTCACTAGTTTGCGGAGCCTGCATAGTGCAGGCTTCAAGCCGGATTCATGCTCAGTAACTAGTGCTCTCCAGGCAGTTATTGAATTGGGTTTCTTTAAATTGGGGAAAGAAATCCATGGTTACATATTGAGAAGTAAGCTTGATTATGATGTCTATGTTTGTACTTCATTGGTGGATATGTATGTTAAGAATGATTGCTTAGATAAGGCTAAGGCAGTGTTCCATCACACAAAGAACAAAAATATTTGTGCTTGGAATTCATTGATATCAGGTTACTCCTTCAAGGGCCTGTTTAGTGATGCAGAAAAACTATTGAACCAGATGGAGGAGGAAAGGATAAAACCCAATTTGGTGACATGGAACGGCTTGGTTTCAGGTTATNCATTGCGGGGCCGTATTGACGAAGCTTTGGCCGTGATCAATCGGATCAAGAGGTTGGGATATACTCCTAATGTGGTGTCCTGGACTGCTTTGATATCAGGCTGTTCTCAAAATGAGAAGTACATGGAGGCCCTACAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACTACCATTTGCAGCTTACTTCGTGCTTGTGCAGGCCCTTCGCTGTTAAAGAAAGGCGAAGAGATACACTGCTTCAGTATGAGACTTGGGTTTGTGGATGATATATACATAGCCACAGCCCTCATCGACATGTATAGCAAGGCGGGAAAATTAAAAGTGGCCCACGAGGTTTTCAGGCAAATCCAAGAGAAAACACTACCGTGTTGGAATTGCATGATGATGGGATATGCCATTTATGGCCATGGGGAAGAGGTAATGACTCTTTTTNACAACATGTGCAAAACTGGTATTAGACCTGATTCCATAACCTTCACGGCTCTTCTATCTGGCTGCAAGAATTCGGGNTTAGTTGATGAAGGATGGAAGTACTTTGACAGTATGCAGACAGATTACAGTATTGTTCCAACAATTGAGCACTACTGTTGCATGGTAGACCTTCTTGGGAAAGCTGGTTTTCTTGATGAAGCTTGGGATTTCATCCAAACTATGCCATTTAAGCCAGATGCCAGCATTTGGGGTGCTCTTCTTGCATCCTGCAGAATTCATAAAAACATTAAGCTGGCAGAGATTGCGGCAAGGAATCTTTTCAAGCTGGAACCATATAACTCTGCTAACTATCTGTTGATGATGAATATATATTCCACTTTAAACAGATGGGACGATGTGGAGCNTCTTAAAAACTCAATGACCGCCTTGGGGATGAAAAGCCCACATGTCTGGAGCTGGACACAAGTGAATCGGACTATTCATGTGTTCTCCACTGAAGGGAAACCACATCCAGAAGAAGGGGAAATATATTTTGAGTTGTATCAATTGATATCNGAAATACGAAAGCTGGGATATGTGCCTGATATTAACTGTGTATATCAGAACATCGAAGACAGGGAGAAAGAGAAGATTCTGCTCAGTCACACTGAGAAGTTGGCCATGGCATATGGAGTGATGAAAACAAAAGGTGGATCACCAATCAGGGTGACTAAGAACACAAGAATTTGTCATGACTGTCACACAGTAGCAAAGTACATTTCTTTGGCCCGAAATCGCGAGATTTTCCTCAGAGATGGCGGCCGTTTTCACCATTTCAAGAATGGAAAATGCTCTTGCAATGATCGTTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00194	64932	67784	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000194s00016325.1	PF01535.15	PPR	238	263	0.2
Glyur000194s00016325.1	PF13041.1	PPR_2	336	382	2.10E-10
Glyur000194s00016325.1	PF13041.1	PPR_2	471	518	1.20E-11
Glyur000194s00016325.1	PF13041.1	PPR_2	541	589	2.30E-13
Glyur000194s00016325.1	PF01535.15	PPR	617	642	0.0034
Glyur000194s00016325.1	PF13041.1	PPR_2	646	689	5.80E-09
Glyur000194s00016325.1	PF01535.15	PPR	717	741	0.12
Glyur000194s00016325.1	PF14432.1	DYW_deaminase	840	940	5.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.865
SRR1783600	control	0.886
SRR1783602	moderate drought stress	1.128
SRR1811619	moderate drought stress	0.911

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.169
DRR006520	Root Summer glycyrrhizin high producing strain	2.044
DRR006521	Root Winter glycyrrhizin high producing strain	0.273
DRR006522	Root Winter glycyrrhizin high producing strain	0.278
DRR006523	Root Summer glycyrrhizin low producing strain	1.388
DRR006524	Root Summer glycyrrhizin low producing strain	1.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.145
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.615
SRR2868004	Drought Stress (root)	1.600
SRR2967015	Control (root)	1.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.889
SRR9715740	Leaf	2.808
SRR9715741	Leaf	1.599
SRR9715739	Root	0.466
SRR9715742	Root	0.874
SRR9715743	Root	0.892

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.344
SRR8749028	MeJA induced 9h	1.982
SRR8749029	MeJA induced 9h	0.542
SRR8749030	Uninduced	0.558
SRR8749031	Uninduced	0.790
SRR8749032	Uninduced	1.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.357
SRR8400027	Control - Root	1.158