Gene detail

Gene detail information of Glyur000193s00013986

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42820.2	4.00E-86	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	KEH38936.1	7.20E-170	splicing factor U2af small subunit A-like protein [Medicago truncatula]
Swissprot	tr\|Q9FMY5\|U2AFB_ARATH	1.00E-128	Splicing factor U2af small subunit B
trEMBL	tr\|A0A072VBG9\|A0A072VBG9_MEDTR	3.00E-170	Splicing factor U2af small subunit A-like protein {ECO:0000313\|EMBL:KEH38936.1}

Sequence

Transcript Sequence

>Glyur000193s00013986.1
CTGTGGGGTTCGAACCCACGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTGCATGTTAGTGGTTGGTCGGATTCCATACTTTATTCAATTAACATAATTCACAGTCACCACCATGTGTAGANTTGAGAGAACAATCTAGAAAGAAGCTTTAAAACGATCCCAGTGCATACAAATCCCCAAATCACAAGCCCTAGCTAAAAGCTCATTCACAGTCGAGAGAGAAATCGCAGTTCCAGGCAGTGTCTTCTTCGCTGAATCAAATCGAATCGAGTCATCATCTTCGTGTGTGTGTTGTGTAGAAACTTGAGGTACTACAAATGGCGGAGCACTTGGCATCGATATTCGGGACAGAGAAGGACAGGGTGAATTGCCCGTTCTACTTCAAGATCGGGGCATGCAGGCACGGTGACCGGTGCTCCCGGTTGCACACGAAGCCCAGCATCAGCCCAACGATATTGCTGTCGAACATGTATCAGCGCCCCGACATGATCACCCCCGGCGTCGACGCACACGGTCAACCCATAGACCCTCGTAAGATCCAGGACCACTTCGAGGAGTTCTACGAAGACCTCTTCGACGAACTCTCCAAGTACGGCGATATCGAAAGCCTCAATGTCTGCGACAACCTCGCCGACCACATGGTTGGTAATGTGTACGTTCAGTTCAGAGAGGAAGAACATGCTGCTAATGCTGTTAGAAACCTCACCGGAAGATTCTACGCTGGTCGGCCGATTATTGTTGATTTCTCTCCGGTGACGGACTTTCGTGAGGCTACTTGCAGGCAGTATGAGGAGAATACTTGCAACCGTGGTGGTTATTGCAACTTCATGCACTTGAAAAGAATTAGCAGGGAATTGAGGCGCCAGTTGTTTGGGAAGTACCATGGAAGGCNCAGCAGGAGCAGGAGCAGGAGTCCTTACAGGCATCGGAGCCATGAGGAGCGGTCTCATCGCAGTCATAGCAGGAAGTATGATGACAGGGACAGGGACAGGGACAGGGACTATCATCGGGAGAGTCATAGCAAGAGACGCAAGAGCTCAAGTCCCGGAAGGAGGAGGGGACGGAGCCGCAGTCAAAGCCCTGGGGGAAGGAGGAACCGTAGTCCGGTCAGGGATAGCAGTGAGGAGAGACGTGCCAGAATTGAGCAGTGGAACAGGGAGAGGGAGGAGCAAGAACCTGCAAGGAAGGTTAATGCTGAGGAAACCAATAATGGTGACAGAGGATACGTGCAAAATGCTGGCACATATCATGGGTATCAGCAGCAAGAGCAGCAACAGCAACCTCCTCAGGAGGGATATTGATCTGTTTTTGTTGCTATGGTTTGTGTTCACTCTCTTTTGTTTCCGTATTCCTATGGTTGTAGGCAATAATTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00193	211819	213647	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000193s00013986.1	PF00642.19	zf-CCCH	14	37	7.10E-07
Glyur000193s00013986.1	PF13893.1	RRM_5	85	144	1.90E-07
Glyur000193s00013986.1	PF00642.19	zf-CCCH	150	173	0.0002

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	82.394
SRR1783600	control	82.729
SRR1783602	moderate drought stress	126.929
SRR1811619	moderate drought stress	113.459

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	93.869
DRR006520	Root Summer glycyrrhizin high producing strain	93.219
DRR006521	Root Winter glycyrrhizin high producing strain	79.730
DRR006522	Root Winter glycyrrhizin high producing strain	78.209
DRR006523	Root Summer glycyrrhizin low producing strain	63.574
DRR006524	Root Summer glycyrrhizin low producing strain	63.684
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.183

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.295
SRR2868004	Drought Stress (root)	81.821
SRR2967015	Control (root)	76.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.555
SRR9715740	Leaf	40.650
SRR9715741	Leaf	57.761
SRR9715739	Root	14.318
SRR9715742	Root	24.815
SRR9715743	Root	22.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.570
SRR8749028	MeJA induced 9h	76.925
SRR8749029	MeJA induced 9h	27.663
SRR8749030	Uninduced	29.219
SRR8749031	Uninduced	22.489
SRR8749032	Uninduced	21.788

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	127.995
SRR8400027	Control - Root	109.745