Gene detail information of Glyur000193s00013985.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03740.1 | 4.00E-16 | histone deacetylase 2C |
| NR | KEH38942.1 | 9.48E-43 | histone deacetylase 2a, putative [Medicago truncatula] |
| Swissprot | tr|Q8LJS2|HDT1_SOYBN | 5.00E-43 | Histone deacetylase HDT1 |
| trEMBL | tr|A0A072VB01|A0A072VB01_MEDTR | 4.00E-43 | Histone deacetylase 2a, putative {ECO:0000313|EMBL:KEH38942.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00193 | 206182 | 208935 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 291.730 |
| SRR1783600 | control | 292.261 |
| SRR1783602 | moderate drought stress | 366.536 |
| SRR1811619 | moderate drought stress | 362.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 474.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 467.452 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 147.384 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 143.801 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 271.995 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 272.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.719 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 262.166 |
| SRR2868004 | Drought Stress (root) | 183.257 |
| SRR2967015 | Control (root) | 203.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 62.465 |
| SRR9715740 | Leaf | 59.677 |
| SRR9715741 | Leaf | 63.441 |
| SRR9715739 | Root | 161.605 |
| SRR9715742 | Root | 295.305 |
| SRR9715743 | Root | 275.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 673.938 |
| SRR8749028 | MeJA induced 9h | 277.659 |
| SRR8749029 | MeJA induced 9h | 408.725 |
| SRR8749030 | Uninduced | 68.753 |
| SRR8749031 | Uninduced | 50.346 |
| SRR8749032 | Uninduced | 136.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 226.835 |
| SRR8400027 | Control - Root | 197.879 |