Gene detail information of Glyur000193s00013979 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44735.2 | 5.00E-08 | PHYTOSULFOKINE 3 PRECURSOR |
| NR | XP_004487528.1 | 3.62E-39 | PREDICTED: putative phytosulfokines 6-like [Cicer arietinum] |
| Swissprot | tr|Q8LA14|PSK6_ARATH | 3.00E-15 | Phytosulfokine-beta (Precursor) |
| trEMBL | tr|I1LTR8|I1LTR8_SOYBN | 3.00E-35 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30650.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00193 | 172661 | 173504 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000193s00013979.1 | PF06404.7 | PSK | 40 | 121 | 3.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.762 |
| SRR1783600 | control | 9.080 |
| SRR1783602 | moderate drought stress | 1.823 |
| SRR1811619 | moderate drought stress | 2.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.654 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.455 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.541 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.221 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 175.520 |
| SRR2868004 | Drought Stress (root) | 161.594 |
| SRR2967015 | Control (root) | 94.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.567 |
| SRR9715740 | Leaf | 9.271 |
| SRR9715741 | Leaf | 4.036 |
| SRR9715739 | Root | 5.140 |
| SRR9715742 | Root | 5.158 |
| SRR9715743 | Root | 2.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.153 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.965 |
| SRR8400027 | Control - Root | 13.325 |