Gene detail

Gene detail information of Glyur000193s00013976.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08250.1	3.00E-171	arogenate dehydratase 6
NR	XP_003540222.1	0	PREDICTED: arogenate dehydratase 3, chloroplastic-like [Glycine max]
COG	YP_004172970.1	2.00E-81	prephenate dehydratase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9SGD6\|AROD6_ARATH	0	Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor)
trEMBL	tr\|I1LTS0\|I1LTS0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30660.1}

Sequence

Transcript Sequence

>Glyur000193s00013976.1
ATGCANACTCTATCGCCGCCTCCGTCTTCCAACGCACTCAACAATCTCAACCACATATTCCGGCCGCGCCTGTCCCATAACAGGGTCGCACCGACCCGAATCGCCGTCAAATGCGCTTCCGGGTTTGAGTCGGGGAGCTACGGANTCGGCTCGAGCCGAGCCGACTGGCAGAGCTCCTGCGCCATCCTCTCCAGCAACGTGGTCTCCCAAGAGAAATTCCCGGCAAATGATAACGGCGCCGCCGCAGACCACATCGTCTCTGTGAACGGCCACAAATCCGCCGTGAGCGACCTGCAGCTCGTCCCAATCGGAAACATCGGCGGCGGAGAGGTCTCCAAGCCTCTCCCTCCGAAGCCGCTCACAATCTCCGACCTCGCTCCGGCACCGATGCACGGCTCGCAGCTGCGCGTGGCCTACCAAGGCGTCCCCGGCGCGTACTCCGAGGCTGCCGCCGGCAAGGCGTACCCGAAGTGTGAGGCAATTCCGTGCGACCAGTTCGAGGTGGCTTTCCAAGCGGTGGAGCTCTGGATCGCCGATCGCGCCGTTCTCCCGGTGGAAAACTCCCTCGGCGGTTCGATCCACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAACTCCCAGTCCACCACTGCCTCCTCGCACTCCCAGGGACCCGAAAAGAGTACCTNACGCGTGTCATCTCGCACCCTCAAGCCCTAGCACAGTGCGAGCACTCGCTCACAAAATTGGGCCTCAACGTGGCGCGCGAGGCCGTCGACGACACCGCCGGCGCCGCCGAGTTCGTCGCNGCGAACGGCCTACGCGACACGGCGGCAATCGCGAGCGCACGCGCCGCCGAACTCTACGGGCTTCAAGTTATGGCTGATGGGATCCAGGATGACCCGTGTAACGTGACCCGATTCGTTATGTTGGCCCGAGAACCCATAATTCCCCGTACGGACAGGCCCTTTAAGACCAGCATTGTTTTCGCGCACGATAAGGGGACTTCGGTGCTTTTCAAGGTGCTTTCCTCGTTTGCGTTTAGGAACATCAGCTTGACGAAGATTGAGTCGCGGCCTCACCGTAACCGTCCGATTAGGCTCGTGGATGATGCAAACGTGGGAACCGCGAAGCACTTTGAGTATTTGTTTTATGTGGATTTTGAGGCGTCGATGGCTGAGGTTAGGGCACAGAACGCGTTGGCGGAGGTGCAGGAGTTCACGTCTTTCTTGCGGGTGTTGGGGAGTTACCCCATGGACATGACACCCTGGACTCCTTCCTCCCGGGGAGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00193	160025	161320	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05359	ADT, PDT	EC:4.2.1.91 4.2.1.51	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009094 L-phenylalanine biosynthetic process

molecular_function

GO:0004664 prephenate dehydratase activity

GO:0016597 amino acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000193s00013976.1	PF00800.13	PDT	137	315	2.20E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.219
SRR1783600	control	32.895
SRR1783602	moderate drought stress	39.208
SRR1811619	moderate drought stress	39.152

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.918
DRR006520	Root Summer glycyrrhizin high producing strain	45.318
DRR006521	Root Winter glycyrrhizin high producing strain	1.948
DRR006522	Root Winter glycyrrhizin high producing strain	2.066
DRR006523	Root Summer glycyrrhizin low producing strain	74.970
DRR006524	Root Summer glycyrrhizin low producing strain	71.149
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.909

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	85.023
SRR2868004	Drought Stress (root)	152.870
SRR2967015	Control (root)	134.406

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	248.604
SRR9715740	Leaf	178.497
SRR9715741	Leaf	263.466
SRR9715739	Root	349.357
SRR9715742	Root	336.334
SRR9715743	Root	334.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.104
SRR8749028	MeJA induced 9h	59.884
SRR8749029	MeJA induced 9h	36.989
SRR8749030	Uninduced	78.351
SRR8749031	Uninduced	23.129
SRR8749032	Uninduced	50.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.790
SRR8400027	Control - Root	66.232