Gene detail

Gene detail information of Glyur000193s00013975

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27810.1	0	nucleobase-ascorbate transporter 12
NR	XP_004487526.1	0	PREDICTED: nucleobase-ascorbate transporter 12-like [Cicer arietinum]
COG	YP_007308721.1	2.00E-81	xanthine/uracil permease [Natronococcus occultus SP4]
Swissprot	tr\|Q3E7D0\|NAT12_ARATH	0	Nucleobase-ascorbate transporter 12
trEMBL	tr\|I1LTS1\|I1LTS1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30670.1}

Sequence

Transcript Sequence

>Glyur000193s00013975.1
CTCAAACATTTTTTTGGATTTTCTCTGTCTTTGCCATTTCTCTTCTCACTTCACGTTTTTCACTCTCTTTCAGTTCCTAACGCCGGAGCTTTCTCTCTCTCTCTCTTCGGGTAGTGAGAAACAAAAACCCTAGACCTTCACTTCTTCACTCACCAGATCTGCAACTGCTACCATTGAAGCTATCATGCGCCACTAGCTTCGTTCTAAAATGTCCGGTTCCGATCCCAAAACTCGCCAACGTCCGGGACCATGGCCACCGGCGCCGGCACCGGACACCAAGGCAATGCCACCCTCTTCATGGGCTAAGAAAACCGGCTTCAAGCCAAAGTTCTCCGGCGAGACCAATGCCGGCGACTCGGGCCAGATAAGCTTGCCGCCGAAGCCCAGAGAGCCCGACGTGAGCACGGATCTCGAAGCGGGTCGGGTTANACCGACGCCTCAGGCGGCGAATGGCGTGGCGCACCGCGAGAAGGTTCCACCGCTTCCACCTTCTTCTAAGGATCAGGTAGTAACGAAGAAGCGCAGGGACTCCGACGGAGTTCCGAGTACGAATGGGCAGGCGACGGCGGAGCAGCCGCCACCGCCGCGGAGACCAGCGAGGAGTGAGGAAGTTGTCGGTGCCTTGCCGCAGACTGTGGATGACGATTGCTTCGTGTCGAGGCACTCGCACATGAAGTATGAGCTCAGAGATTCNCCTGGTTTAGTTCCCATTGGTGTGTACGGTATCCAGCATTACGTTTCGATATTAGGTTCGTTGATTCTGATTCCGCTCGTCNTAGTTCCTGCGATGGGAGGTTCTCATGATGATACTTCTGCGGTGGTATCAACTGTGCTCTTTGTGTCGGGAGTGACTACACTATTGCATACTACTTTTGGGTCCAGGTTGCCCTTGATACAGGGGCCTTCCTTTGTTTATCTGGCTCCAGTTTTGGCGATCATCAACTCCCCGGAGTTTCAAGGGTTAAATGAAAATAAATTCAAACATATAATGAAGGAGCTGCAGGGGGCTATAATTATTGGATCTGCTTTTCAAACTTTCCTTGGATATACTGGACTTATGTCCCTGTTAGTAAGGTTGATCAATCCTGTGGTTGTATCCCCAACTATTGCTGCAGTTGGGCTTTCATTTTACGGTTATGGTTTTCCGCTAGTTGGGACATGTCTTGAGATTGGTGCAGTAGAAATATTAGTGGCTATTGTTTTTTCTCTTTATCTTCGTAAGATATCTGTTCTTGGACACCGCATATTTCTAATATATGCAGTTCCTTTGGGTTTGGCAATTACATGGGCAGTTGCTTTCTTGCTGACTGAAGCTGGAGCCTACAACTACAAAGGGTGTGACATAAACATACCTGCCTCAAATATGGTTTCAGAGCACTGCAGAAAGCATGTTTCAAGGATGAAGCATTGTCGAGTTGATACTTCTCTTGCAATGGAATCATCCCCATGGTTTAGATTTCCTTATCCACTACAATGGGGTACCCCTGTCTTTCACTGGAAAATGGCTCTTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGGTTGGCTCATATCATGCATCTTCATTATTAGTAGCATCCAGACCTCCAACTCGTGGAGTTCTTAGCCGAGGAATTGGATTGGAAGGTCTTTGTAGTGTGTTGGCTGGTCTCTGGGGTACTGGAACTGGGTCTACAACTTTAACAGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGAGCAGTTCAATTGGGTGCATGTTTTCTGATAGTGTTNTCTCTTGTTGGTAAGGTTGGAGGGTTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTCTCCTCTGCTTTATGGGGGCAATGCTTACAGCATTGGGCTTGTCAAATCTACGCTATAGTGAGGCTGGAAGCTCTCGCAATATCATCATAATTGGGTTATCATTGTTTTTCTCTCTTTCCATACCTGCATACTTTCAACAATATGGCATTTCTCCAAATTCCAACNTGTCAGTGCCTAGTTATTTTCAGCCTTACATTGTGGCTTCTCATGGGCCTTTCCGAAGCAAATATGGAGGGTTGAACTATGTCCTGAACACAATTTTTTCACTACACATGGTGATAGCTTTTCTTGTAGCTGTTATCTTGGACAATACTGTACCTGGCAGTAAGCAAGAACGTGGGGTATATGTTTGGTCCGAACCTGAGGTTGCTAAAAGGGAGCCTGCTGTTGCCAGTGACTATGAGTTGCCGNTGAGAGTTGGTCGCATTTTCAGATGGGTGAAGTGGGTTGGCCTGTGAATGACAGGGTTCTCCTTGGCTGACCATTTTCAGTTTAGGAATGTTGTCAAGTGTCAACTGTCCAAGGTACACCATTTTCAGTTTGGGTTCAATGAAGGGTAGTATGATTGGTCATAGTTCCGAGTTAATTCGTGTACATCAAAATTCCGGAGGGGGTCTATTTGTATTATAATTTATTTATTTCGATTAACCATGTATCTAGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00193	136152	147322	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000193s00013975.1	PF00860.15	Xan_ur_permease	170	587	1.60E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.010
SRR1783600	control	21.021
SRR1783602	moderate drought stress	5.794
SRR1811619	moderate drought stress	5.793

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.802
DRR006520	Root Summer glycyrrhizin high producing strain	9.005
DRR006521	Root Winter glycyrrhizin high producing strain	0.533
DRR006522	Root Winter glycyrrhizin high producing strain	0.521
DRR006523	Root Summer glycyrrhizin low producing strain	6.214
DRR006524	Root Summer glycyrrhizin low producing strain	6.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.038
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.092

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.898
SRR2868004	Drought Stress (root)	12.492
SRR2967015	Control (root)	11.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.494
SRR9715740	Leaf	4.716
SRR9715741	Leaf	5.382
SRR9715739	Root	9.874
SRR9715742	Root	10.154
SRR9715743	Root	11.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.481
SRR8749028	MeJA induced 9h	16.878
SRR8749029	MeJA induced 9h	12.093
SRR8749030	Uninduced	0.733
SRR8749031	Uninduced	0.123
SRR8749032	Uninduced	0.772

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.856
SRR8400027	Control - Root	21.793