Gene detail information of Glyur000193s00013974 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44860.2 | 4.00E-62 | Ribosomal protein L24e family protein |
| NR | XP_003539809.1 | 2.31E-106 | PREDICTED: probable ribosome biogenesis protein RLP24-like [Glycine max] |
| COG | YP_002465621.1 | 4.00E-14 | Ribosomal protein L24E [Methanosphaerula palustris E1-9c] |
| Swissprot | tr|O22165|RLP24_ARATH | 4.00E-78 | Probable ribosome biogenesis protein RLP24 |
| trEMBL | tr|K7LTR9|K7LTR9_SOYBN | 9.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G09090.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00193 | 127361 | 129614 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000193s00013974.1 | PF01246.15 | Ribosomal_L24e | 1 | 67 | 2.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.584 |
| SRR1783600 | control | 54.577 |
| SRR1783602 | moderate drought stress | 79.334 |
| SRR1811619 | moderate drought stress | 78.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 103.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 101.510 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 115.176 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 112.340 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 151.681 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 152.214 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.380 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 88.592 |
| SRR2868004 | Drought Stress (root) | 77.860 |
| SRR2967015 | Control (root) | 84.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.938 |
| SRR9715740 | Leaf | 67.621 |
| SRR9715741 | Leaf | 47.616 |
| SRR9715739 | Root | 11.402 |
| SRR9715742 | Root | 31.777 |
| SRR9715743 | Root | 29.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 202.319 |
| SRR8749028 | MeJA induced 9h | 134.422 |
| SRR8749029 | MeJA induced 9h | 190.668 |
| SRR8749030 | Uninduced | 70.568 |
| SRR8749031 | Uninduced | 53.238 |
| SRR8749032 | Uninduced | 63.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 94.715 |
| SRR8400027 | Control - Root | 74.773 |