Gene detail information of Glyur000193s00013970 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22580.1 | 7.00E-34 | Stress responsive A/B Barrel Domain |
| NR | AFK45282.1 | 9.43E-65 | unknown [Lotus japonicus] |
| COG | YP_003372990.1 | 5.00E-09 | stress responsive alpha-beta barrel domain-containing protein [Pirellula staleyi DSM 6068] |
| Swissprot | tr|Q9FK81|Y5258_ARATH | 1.00E-42 | Uncharacterized protein At5g22580 |
| trEMBL | tr|I3SYE0|I3SYE0_LOTJA | 4.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:AFK45282.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00193 | 106532 | 107817 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000193s00013970.1 | PF07876.7 | Dabb | 5 | 96 | 1.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 248.175 |
| SRR1783600 | control | 248.936 |
| SRR1783602 | moderate drought stress | 105.477 |
| SRR1811619 | moderate drought stress | 104.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 287.476 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 283.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.553 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.298 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 212.135 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 211.506 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.578 |
| SRR2868004 | Drought Stress (root) | 13.119 |
| SRR2967015 | Control (root) | 12.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.268 |
| SRR9715740 | Leaf | 1.771 |
| SRR9715741 | Leaf | 6.490 |
| SRR9715739 | Root | 101.351 |
| SRR9715742 | Root | 114.382 |
| SRR9715743 | Root | 112.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.648 |
| SRR8749028 | MeJA induced 9h | 2.308 |
| SRR8749029 | MeJA induced 9h | 4.743 |
| SRR8749030 | Uninduced | 4.059 |
| SRR8749031 | Uninduced | 1.872 |
| SRR8749032 | Uninduced | 2.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 140.838 |
| SRR8400027 | Control - Root | 248.671 |