Gene detail information of Glyur000193s00013962 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27680.1 | 2.00E-174 | NAD(P)-linked oxidoreductase superfamily protein |
| NR | CBI28362.3 | 0 | unnamed protein product [Vitis vinifera] |
| COG | YP_007147256.1 | 5.00E-128 | putative oxidoreductase, aryl-alcohol dehydrogenase like protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q3L181|PERR_RAUSE | 3.00E-13 | Perakine reductase |
| trEMBL | tr|V7BYH2|V7BYH2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22085.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00193 | 40689 | 44222 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000193s00013962.1 | PF00248.16 | Aldo_ket_red | 207 | 509 | 8.10E-55 |
| Glyur000193s00013962.2 | PF00248.16 | Aldo_ket_red | 207 | 511 | 2.90E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.346 |
| SRR1783600 | control | 10.197 |
| SRR1783602 | moderate drought stress | 10.178 |
| SRR1811619 | moderate drought stress | 10.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.586 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.615 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.907 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.669 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.282 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.248 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 132.001 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 131.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.356 |
| SRR2868004 | Drought Stress (root) | 9.641 |
| SRR2967015 | Control (root) | 13.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.937 |
| SRR9715740 | Leaf | 117.132 |
| SRR9715741 | Leaf | 43.653 |
| SRR9715739 | Root | 2.467 |
| SRR9715742 | Root | 4.674 |
| SRR9715743 | Root | 4.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.100 |
| SRR8749028 | MeJA induced 9h | 26.293 |
| SRR8749029 | MeJA induced 9h | 17.715 |
| SRR8749030 | Uninduced | 13.542 |
| SRR8749031 | Uninduced | 4.943 |
| SRR8749032 | Uninduced | 6.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.922 |
| SRR8400027 | Control - Root | 13.987 |