Gene detail information of Glyur000192s00009356 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60950.1 | 5.00E-39 | 2Fe-2S ferredoxin-like superfamily protein |
| NR | AFK49089.1 | 7.73E-81 | unknown [Lotus japonicus] |
| COG | NP_442127.1 | 9.00E-46 | ferredoxin [Synechocystis sp. PCC 6803] |
| Swissprot | tr|P09911|FER1_PEA | 2.00E-71 | Ferredoxin-1, chloroplastic (Precursor) |
| trEMBL | tr|I3T997|I3T997_LOTJA | 3.00E-81 | Uncharacterized protein {ECO:0000313|EMBL:AFK49089.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00192 | 222586 | 223017 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000192s00009356.1 | PF00111.22 | Fer2 | 59 | 128 | 1.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.449 |
| SRR1783600 | control | 3.032 |
| SRR1783602 | moderate drought stress | 2.065 |
| SRR1811619 | moderate drought stress | 2.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.534 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.490 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.913 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.254 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.344 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.407 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1626.218 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2128.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.085 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.770 |
| SRR9715740 | Leaf | 12.785 |
| SRR9715741 | Leaf | 2.088 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.078 |
| SRR8749032 | Uninduced | 11.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.068 |