Gene detail

Gene detail information of Glyur000192s00009354

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20020.2	2.00E-43
NR	XP_006592670.1	0	PREDICTED: calcium-binding protein P-like [Glycine max]
Swissprot	tr\|Q38732\|DAG_ANTMA	7.00E-35	DAG protein, chloroplastic (Precursor)
trEMBL	tr\|I1LTF0\|I1LTF0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G29060.1}

Sequence

Transcript Sequence

>Glyur000192s00009354.1
CGCGATCCTTCTGTTCCAGAGAATAAATTAAAAAGAAAAGCCTGTAAAACCCTAACTCCCCAAAACCCTACACTTTTTTCTCATCACTGTGATGGCGTCGTCGTTAATTCGCTTCCGCAGCAGCCTCGGAGCACTCTCCNGCCTCCACCGGTCCTTCTCAGCGACTGCGACTGCAACTGCAACATCGCGTTCCGCCCCAATCCGGGGCACCNTTTCACCATCACCATGCTCATATTGGCAATCCCCGAATGTTGGAGTCCAATCCCGTTCATTCAGATCATCGTCGATTTCGCTTCTGTCTGCTCGATCACCACAGACGAACATTCCGGACGAGATTGGGCCAGACACGATCCTCTTCGAGGGATGCGACTACAACCACTGGCTCTTCGTCATGGACTTCCCCAGAGACAACAACAAGCCCTCCCCCGAAGAGATGATTCGCATTTACGAGGAGACCTGTGCTAAGGGTCTCAACATCAGCACAACNACTTACACAGGCTTTCAGGCTGTCATGACCGAAGAAGAGTCCAAGAAATTTGAAGGTCTCCCCGGAGTCATCTTTGTGCTACCTGATTCCTATATTGACCCAGTGAACAAGCAGTATGGAGGAGATCAGTACATTAATGGAACAATCATCCCTCGACCTCCACCTGCACAGTATGGGAGAAATCAAGGACGACGAGACCGGCCTAGGAGCCCTGGCCAATATAATCGGCAAGAAAATCCAATGCCAAACCCTCAAGGGAATCCCTCTTACAATAATTGGGGTCCCGTGCCAGGGGATGGAAGGAACTCTGGTCAAGCATCACAGAATTATCCACCCCAACAGAACTATGGTCAACCATCACAGAATTATCCACCAAAACAGAACTATGGCCAAGCATACCAGACTTATCCACCCCAACAGAACTTTGGCCAAGCATCGCAGACTTATCCACCACAACAGAACTATGGTCAAGCATCACAAAATTATCCACCCCAACAGAACCGTGGTCAAACATCCCAAAGTTATCAACCCAACAGAACTATGGTCAAGCATCACAAAATTATCCACCCCAACAGAACCGTGGTCAAACATCCCAAAAACTATGGTCAAGTATCACAAAATTATCCACCCCAACAGAACTTTAACCAAGCATCACAGAATTATGCCAAACCGCAAACCTATGATTCTGCTTCACCACAATATGCACAGCAGCAGAGCTTTGGACCGCCGGGACAAGGAGAAAGAAGAAATTATGTGCCACAGCAGAACTTTGGACCACAGGGACAAGGAGAAAGGAGAGACCCTGTGCCCGGGCATGGTGAGCGGGATGATGCTTTTACCCCACAATATATGGAGGATTTCAAACCAACATATATGAAGGAATTTGAACANGCTGAGCAGGGTAATTATCCTGCTAAAGAACAGACGGGGTCCCAACAAAGATATCCACCTCCTGGCCAGGGCAATTTTACTGGAGAGGGAAGATATTGATAGTAGTCTGAGACCTGCTGGCGGCCTGTTATTGAAGTTGCTAATAGCATTCTAAGCTGNTTGCATATCCCTGCCAATGTGGTAAAAGTTGGATCCGTTGAGTTTTTCACTGTATATCCGTCAATTTTCAGTCTATGCTCTGTTTCCATGACAAAAGTTGGATGTGGTATGTAAAGCTTGCACTAGTGGCCGACGGTTTTTTTATATTTTTTTAAATATTTGGCAACCTGGTTTTTTTATTCATGTTTGAACCGTGAATTTTATATGGCTCTTTCATAAATACCTCTTTTTACATAAAATGCTTGTGTTATGAGTGGATCGTTCCACATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	211767	214269	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	96.289
SRR1783600	control	96.679
SRR1783602	moderate drought stress	108.708
SRR1811619	moderate drought stress	109.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	74.933
DRR006520	Root Summer glycyrrhizin high producing strain	71.540
DRR006521	Root Winter glycyrrhizin high producing strain	26.638
DRR006522	Root Winter glycyrrhizin high producing strain	25.870
DRR006523	Root Summer glycyrrhizin low producing strain	49.894
DRR006524	Root Summer glycyrrhizin low producing strain	49.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.503
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.563

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.640
SRR2868004	Drought Stress (root)	51.256
SRR2967015	Control (root)	42.135

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.640
SRR9715740	Leaf	35.697
SRR9715741	Leaf	27.477
SRR9715739	Root	31.299
SRR9715742	Root	60.836
SRR9715743	Root	50.921

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	126.251
SRR8749028	MeJA induced 9h	108.552
SRR8749029	MeJA induced 9h	78.393
SRR8749030	Uninduced	16.242
SRR8749031	Uninduced	9.637
SRR8749032	Uninduced	12.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.855
SRR8400027	Control - Root	52.399