Gene detail

Gene detail information of Glyur000192s00009351.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61010.3	0	cleavage and polyadenylation specificity factor 73-I
NR	XP_004485469.1	0	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cicer arietinum]
COG	YP_004003955.1	6.00E-59	kh-domain/beta-lactamase-domain-containing protein [Methanothermus fervidus DSM 2088]
Swissprot	tr\|Q9C952\|CPSF3_ARATH	0	Cleavage and polyadenylation specificity factor subunit 3-I
trEMBL	tr\|K7LVE4\|K7LVE4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G29031.1}

Sequence

Transcript Sequence

>Glyur000192s00009351.1
CTTCATGGTAACAGAGTAGAAAAGACTCAAAAGAGTAGACGCAGTTGAATTGGAATTTGTTGTGGTGAGAGAGGGAGAGAATCATAATCAGGATTCAGAATGGCTTCTTCAGCAAAGAGAAGTGGCTGGAGTGTTGTGGGTGGGAGCAAGAGAGAGGAAGACCAACTGATAGTGACGCCACTAGGTGCCGGAAACGAAGTTGGTCGTTCATGCGTGTACATGTCGTACAAGGGCAAAACGGTGTTGTTCGACTGCGGAATACACCCGGCCTANTCCGGCATGGCGGCGCTGCCATACTTCGACGAGATCGACCCCTCAACGGTGGACGTCCTTCTCATCACTCACTTCCACTTGGACCACGCCGCATCGCTTCCCTATTTCCTCGAGAAGACGACGTTTCGTGGGAGAGTCTTCATGACCTACGCAACAAAGGCCATTTACAAGCTCCTCTTGTCCGATTTCGTCAAAGTCAGCAAGGTTTCCGTTGAAGACATGCTCTACGATGAACAAGACATCAACCGCTCCATGGATAAAATCGAGGTTATTGATTTCCATCAAACGGTGGAAGTGAACGGTATTCGATTCTGGTGTTATACTGCAGGCCATGTCCTTGGTGCTGCTATGTTCATGGTGGACATTGGAGGTGTTCGAGTTCTGTATACCGGAGACTATTCGCGCGAGGAAGATCGGCATCTCCGTGCTGCTGAGACCCCACAGTTCTCCCCGGATGTCTGCATTATAGAGTCCACCTATGGTGTGCAGCACCATCAGCCCCGGCACACACGAGAGAAGCGCTTCACGGATGTTATCCACTCCACTCTCTCTCAAGGGGGTCGTGTCTTGATTCCTGCGTTTGCCCTTGGTCGTGCGCAGGAGCTCCTCTTGATCCTTGATGAATACTGGGCAAATCATCCGGAACTCCAGAATATACCCATCTATTATGCTTCTCCTCTTGCGAAAAAATGTTTGACTGTGTATGAGACGTACACCCTTTCCATGAATGACAGGATCCAGAATGCAAAATCGAATCCCTTTTCGTTTAAGCACATACAAGCTTTAAGTAGCATTGAGGTTTTCAAAGATGTCGGACCGTCTGTGGTGATGGCGAGCCCTGGTGGACTTCAGAGTGGGTTGTCGAGGCAATTGTTTGACATGTGGTGCTCCGACAAGAGGAATGCCTGCGTTATTCCGGGGTATGTTGTTGAAGGGACACTGGCAAAAACCATCATCAATGAACCCAAGGAAGTGACTCTCATGAATGGACTCACTGCACCTCTCAACATGCAGGTGCACTACATTTCCTTTTCTGCCCATGCAGACTCTGCTCAGACAAGTGCTTTCTTAGAAGAGCTAAATCCGCCTAACATAATTCTCGTTCATGGGGAAGCCAATGAGATGGGGAGGCTCAAGCAGAAGCTCATGAGTCAATTTGCTGATCGCAACACTAAGATCCTCACCCCAAAAAACTGTCAGTCTGTGGAAATGTATTTCAATTCACAGAAAATGGCAAAAACCATTGGGAAGCTGGCCGAGAAAACGCCGGAAGTGGGTGAGACTGTTAGTGGTTTGCTGGTTAAGAAAGGCTTCACATATCAGATAATGGCACCTGATGATCTCCATGTCTTCTCACAGCTATCAACTGCAAACATTACTCAGAGAATTACCATCCCTTATTCAGGTGCCTTCAGTGTAATACAGCATAGACTCAGACAGATATATGAGAGCGTGGACCCATCAGTGGATGAAGAATCTGGAGTCCCAACATTGCTAGTCCATGAGCGTGTGACAGTGAAGCATGAGTCTGAGAAGCATATCTCGTTGCATTGGTCATCAGACCCCATCAGTGACATGGTATCAGATTCCATTGTAGCTCTAATCCTAAACATCAGCCGCGATATCCCGAAAATAATGGATGAATCAGATGCCGTGAAGATTGAGGAAGAGAGTGAGAAGAAGGCAGAGAAGGTTATGCATGCCCTCCTCAATTCACTCTTTGGAGATGTGAAGGTAGGAGAAAACGGGAAGCTGATTATTAACATTGATGGGAATGTGGCAGAACTCAACAAAGAAAGTGGGGAAGTTGAGAGTGAAAATGAAGGCCTTAAGGAAAGAGTAAGAACGGCATTCAGGCGTATTCAAAGTTCTGTGAAGCCGATTCCTCTTTCTGCACCGTCGCATCTCATGGCGGCTTCAAGGGAGGACGTTGGAACTACTCCTAGCGGGGATGGGGGCCGCGGTGCATCAATGGAGGGGAAGGAGAACGAAGAAATGGGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	206871	210506	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14403	CPSF3, YSH1	EC:3.1.27.-	mRNA surveillance pathway	map03015

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009351.1	PF00753.22	Lactamase_B	32	199	2.70E-19
Glyur000192s00009351.1	PF10996.3	Beta-Casp	257	376	3.00E-27
Glyur000192s00009351.1	PF07521.7	RMMBL	391	430	6.90E-13
Glyur000192s00009351.1	PF11718.3	CPSF73-100_C	484	686	1.50E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.712
SRR1783600	control	19.164
SRR1783602	moderate drought stress	18.539
SRR1811619	moderate drought stress	18.528

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.588
DRR006520	Root Summer glycyrrhizin high producing strain	21.287
DRR006521	Root Winter glycyrrhizin high producing strain	14.938
DRR006522	Root Winter glycyrrhizin high producing strain	15.103
DRR006523	Root Summer glycyrrhizin low producing strain	24.800
DRR006524	Root Summer glycyrrhizin low producing strain	25.114
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.209
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.117

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.971
SRR2868004	Drought Stress (root)	19.091
SRR2967015	Control (root)	17.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.354
SRR9715740	Leaf	11.158
SRR9715741	Leaf	9.701
SRR9715739	Root	12.440
SRR9715742	Root	23.237
SRR9715743	Root	20.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.665
SRR8749028	MeJA induced 9h	18.382
SRR8749029	MeJA induced 9h	11.114
SRR8749030	Uninduced	7.591
SRR8749031	Uninduced	1.446
SRR8749032	Uninduced	1.431

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.333
SRR8400027	Control - Root	14.960