Gene detail

Gene detail information of Glyur000192s00009350.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11450.1	0	DnaJ domain ;Myb-like DNA-binding domain
NR	XP_003531595.1	0	PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max]
COG	YP_006766380.1	3.00E-09	DnaJ-class molecular chaperone with C-terminal Zn finger domain [Leptospirillum ferriphilum ML-04]
Swissprot	tr\|Q6XL73\|DNJ39_ARATH	1.00E-06	Chaperone protein dnaJ 39
trEMBL	tr\|I1KUP6\|I1KUP6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G20150.1}

Sequence

Transcript Sequence

>Glyur000192s00009350.1
ATGGCTGTACATACAAAATTCCGTCTTATTGCTTACTCACAAGAGATTGAAGATGGGCAGCCTATTTTTGTTTCTTCAAACTGCCTTCCAGTCAAGGCATTGAAACTTGAACCTGCAGGTCANGCTTTCCATTCTGCTGCACTTAAACTTCTTGGTGTTCAGGTAGATAACAGAGGTGCTGATAATAAAAAGGTGGTTGAGGACAAGGAACAAACATATTTATCATCTGACTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGTTCTGGAGACAACCAGCAGGATCACTATGCATTATTGGGTTTGAGCCATCTCAGGTATCTTGCTACAGAGGATCAAATACGTAAAAGTTACCGTGAAACTGCTTTGAGGTTTCATCCAGACAAACAGGCTGCCCTTCTTCTTGCTGAGGAAACTGAAGCTGCGAAGCAGGCAAAAAAGGATGAAATAGAAAGTCATTTTAAGGCAATCCAGGAAGCCTATGAAGTGTTGATCGATCCTTTAAAGAGAAGAATTTATGATTCCACAGATGAGTTTGACGATGAGATTCCCACTGATTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGGCGGTGGTCGGTTAGTCAACCAATTCCATCACTAGGTGACGATAAGACTCCAATAAAAGAAGTTGACAATTTCTACAATTTTTGGTACTCCTTCAAAAGCTGGAGGGAGTTTCCCCATGCTGATGAGTTTGACCTTGAGCAAGCTGAGTCTCGAGATCATAGGAGGTGGATGGAAAGGCAGAATGCTAAACTGTCTGAAAAAGCTAGGAAGGAAGAGTATGCACGGATACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCGAGAATATTGAGAAGAAAGGAAGAGGAAAAAGCTGAGAAGCAACGGAAAAAAGAGGCTAGGTTCCTGGCAAAGCGGTTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAAGCGACGAAAAGAGGAGGAAGAGAGACAAGCCACTGAAGTTGCTTTACAGCAGAAGAAGGTGAAGGAGAAAGAGAAAAAGTTGTTGCGGAAGGAGCGAACACGTCTTCGAAATCTCTCAGGACCTATCGTGTCACAACATTTACTGGATATTTCTGAAGATGATGTAGAAAGGCTTTGCATGTCACTTGATATGGAGCGGCTGAGGGGTTTGTGCGAGAAAATGGAAGGCAAACAGGTGTCGGAGCAAGCAGAAGTTGTGAGGGATGCACTGAGCTGCAAGAAAGATGTGGCTGATGAGAAAAGTAATCNACAAAATGGTTCTGTCAAGGTTAATGGCATTGGCAGTAGTAGTGGTTCAGTGGGCAACCTTGAGAAGAAGGAGAAACCTTGGAACAAAGAAGAGATTGAGCTACTGAGGAAAGGAATGCAAAAATATCCGAAAGGAACTTCACGGAGGTGGGAGGTTATCTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATAATGAAGGCAACCAAAACTGTTCTCCTCCAGAAGCCCGATTCATCCAAGGCTTTTGACACATTTCTCGAGAAAAGGAAACCTGCTGCACAACCAATTGCATCTCCACTATCCACCAGAGAAGAATTGGAAGGGGCATCAACAACAACAACTGCAACTCCAACTGAAAGTAGTGCTGCTTCCTCAACAACAAATAGCAGCTCGGAAGACTCTCATCCCGCTCCGAACGGAGTTTCCCCNGGTAGTTCAGAACAGGATGTGTGGTCTGCAGTTCAGGAAAGAGCACTGGTTCAGGCTTTAAAAGCCTTCCCAAAGGAAACCAACCAGAGATGGGAACGAGTAGCAGCAGCTGTACCTGGGAAGACTGTNAATCAGTGCAAGAAAAAATTTGCTGTGATGAAGGAGAGCTTCAGGAACAAGAAAAGTGCAGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	203915	205846	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009350.1	PF00226.26	DnaJ	95	174	1.30E-16
Glyur000192s00009350.1	PF00249.26	Myb_DNA-binding	459	500	1.80E-05
Glyur000192s00009350.1	PF00249.26	Myb_DNA-binding	586	629	2.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.281
SRR1783600	control	31.672
SRR1783602	moderate drought stress	24.234
SRR1811619	moderate drought stress	27.619

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.306
DRR006520	Root Summer glycyrrhizin high producing strain	40.853
DRR006521	Root Winter glycyrrhizin high producing strain	49.237
DRR006522	Root Winter glycyrrhizin high producing strain	48.425
DRR006523	Root Summer glycyrrhizin low producing strain	45.844
DRR006524	Root Summer glycyrrhizin low producing strain	44.865
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.628
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.148

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.659
SRR2868004	Drought Stress (root)	33.016
SRR2967015	Control (root)	34.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.312
SRR9715740	Leaf	27.168
SRR9715741	Leaf	24.416
SRR9715739	Root	4.956
SRR9715742	Root	30.555
SRR9715743	Root	26.154

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.697
SRR8749028	MeJA induced 9h	54.597
SRR8749029	MeJA induced 9h	48.705
SRR8749030	Uninduced	61.634
SRR8749031	Uninduced	81.656
SRR8749032	Uninduced	49.857

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.217
SRR8400027	Control - Root	30.547