Gene detail

Gene detail information of Glyur000192s00009345.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G06634.1	4.00E-120	zinc finger (C2H2 type) family protein
NR	XP_004485467.1	0	PREDICTED: uncharacterized zinc finger protein At4g06634-like [Cicer arietinum]
COG	YP_004117948.1	8.00E-13	zinc finger C2H2-type domain-containing protein [Pantoea sp. At-9b]
Swissprot	tr\|Q2V3L3\|Y4634_ARATH	2.00E-158	Uncharacterized zinc finger protein At4g06634
trEMBL	tr\|I3SI97\|I3SI97_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39989.1}

Sequence

Transcript Sequence

>Glyur000192s00009345.1
CTTGAAAGTGTCTGCAATCCAAAATCGAAAACGATTCCGGTCTAGTCCGGTTCAATCTCCGTTTTGAGAAAAAAGAAAAGCAGGAATCCGACATGAACATGGAATGGAACCAAGCTTCATCCTCCAACAACAACAACTCCCTCCTATTTCCTCTCATCCTCCAACTCCCTCCGTAGTTCCTCCTTCAAACCCTAACCCTAAAATTCTTCTCTCGGGGATCACAGACAGAGCGATGGAGACTCACTTCACTCACAGTCTCTTCGAGAGGCGCCCCTTCCTCAAGTCCAAGGCTCCCGCTGTCAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTGGCAACTGGCGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACATTAAAGGCCTTGAAAGANAAGGAAAAAGAACCTTCAGCTCCTGAGCCAGAACCTGAACCAACTACTGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCCGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCATTATGAGGGATGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACAGGGGAGAGGGATTTTGTATGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTCAACCTGAGGTCTCATATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCGGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCATATCGCTTCTCATCATGAAAAGAATGCATCAGTGGATGTGACAAAGTATACTACTCCGCCTTCAGAAAAGCAACCAAAAGCTACTAAACCTTCTGGGGGAACTTACGGTTCAGCATCCTCTGATCGGCCATATGCATGCCCTTATGAAGGGTGTGAAAAAGCATACATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAGCATCCTGGCCACATGTCTGATGAAAATGCTGTGCATGCTCTGGCTAATAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTACGGTGGGAAACGGTCAAATGGTAAAAGCCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAGTTGCCTCCTTCCAAAGTTACCCAACGAAAAGGGTCAGCTCCAACTCCTGCCACTTTAAATGTGGTTAAAAAGTCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGTGAAGAGACTGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAATGAAGATGATGATGAGGAAACAGAATATGAAGACTGATATTTACTTATGGCATCTTCTATGAATTCAACACCTCTCTTTCTCATTTTGACTCTCCNACAAGATTAGCTTTCCTATTATTTGCTTCAAGAAATGCCATTTCCTTGTCGCACAATAGATTGGATACCGGAAGCATGAATGATGTGATAGGACGATTTTATATTAATAAAAGATGACGTAATATTTTTATTGTTTCAATATTTTCTGCTGATGCGGTGGTGTTCATTTAAATATCTTGATGTAATTTTGTCCGAGCAAGCNTGAACTGCATTCTTGTGAGTATCGTAGCAGTTCCATTCCAATATTTGGTACCTTTTTTGCTCTCCCTTTTTATTCTCATTTAAAAAGAGAACTTTTTANGTTTTACATGTTCTACTGTATCTTTTTTTTTTGGCCAACATGTTCTACTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	182154	186002	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009345.1	PF13894.1	zf-C2H2_4	120	141	0.82
Glyur000192s00009345.1	PF13465.1	zf-H2C2_2	166	191	2.90E-05
Glyur000192s00009345.1	PF13465.1	zf-H2C2_2	195	222	0.00011
Glyur000192s00009345.1	PF13894.1	zf-C2H2_4	273	298	0.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.345
SRR1783600	control	12.322
SRR1783602	moderate drought stress	12.038
SRR1811619	moderate drought stress	12.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.745
DRR006520	Root Summer glycyrrhizin high producing strain	17.675
DRR006521	Root Winter glycyrrhizin high producing strain	12.526
DRR006522	Root Winter glycyrrhizin high producing strain	12.419
DRR006523	Root Summer glycyrrhizin low producing strain	21.624
DRR006524	Root Summer glycyrrhizin low producing strain	21.334
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.966

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.770
SRR2868004	Drought Stress (root)	24.880
SRR2967015	Control (root)	21.468

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.672
SRR9715740	Leaf	21.078
SRR9715741	Leaf	17.446
SRR9715739	Root	6.248
SRR9715742	Root	16.883
SRR9715743	Root	15.586

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.241
SRR8749028	MeJA induced 9h	17.268
SRR8749029	MeJA induced 9h	13.359
SRR8749030	Uninduced	13.310
SRR8749031	Uninduced	8.995
SRR8749032	Uninduced	10.756

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.277
SRR8400027	Control - Root	22.480