Gene detail information of Glyur000192s00009341 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58100.1 | 3.00E-65 | TCP family transcription factor |
| NR | XP_003592963.1 | 0 | TCP family transcription factor-like protein [Medicago truncatula] |
| Swissprot | tr|Q9C518|TCP8_ARATH | 1.00E-83 | Transcription factor TCP8 |
| trEMBL | tr|G7INN6|G7INN6_MEDTR | 0 | TCP family transcription factor {ECO:0000313|EMBL:AES63214.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00192 | 163581 | 165615 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000192s00009341.1 | PF03634.8 | TCP | 137 | 303 | 1.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 86.010 |
| SRR1783600 | control | 87.880 |
| SRR1783602 | moderate drought stress | 143.014 |
| SRR1811619 | moderate drought stress | 143.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.817 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.100 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.273 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.684 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.874 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.444 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.586 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.411 |
| SRR2868004 | Drought Stress (root) | 74.890 |
| SRR2967015 | Control (root) | 92.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.116 |
| SRR9715740 | Leaf | 14.390 |
| SRR9715741 | Leaf | 14.916 |
| SRR9715739 | Root | 53.338 |
| SRR9715742 | Root | 71.506 |
| SRR9715743 | Root | 62.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.602 |
| SRR8749028 | MeJA induced 9h | 8.220 |
| SRR8749029 | MeJA induced 9h | 7.711 |
| SRR8749030 | Uninduced | 1.799 |
| SRR8749031 | Uninduced | 0.405 |
| SRR8749032 | Uninduced | 1.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.388 |
| SRR8400027 | Control - Root | 75.251 |