Gene detail

Gene detail information of Glyur000192s00009336.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09795.1	6.00E-174	ATP phosphoribosyl transferase 2
NR	XP_004485463.1	0	PREDICTED: ATP phosphoribosyltransferase-like [Cicer arietinum]
COG	YP_004175002.1	5.00E-88	ATP phosphoribosyltransferase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q8GSJ1\|HIS1B_ARATH	0	ATP phosphoribosyltransferase 2, chloroplastic (Precursor)
trEMBL	tr\|G7JFL4\|G7JFL4_MEDTR	0	ATP phosphoribosyltransferase catalytic subunit {ECO:0000313\|EMBL:AES92497.1}

Sequence

Transcript Sequence

>Glyur000192s00009336.1
GGGGTATATTGAGTGAGATATTTGCAGAGGGTTCACACTCACACGAGCAGAACAGCGAAGGAAATCTGNGTCACAAGTGGGGGAAAGTGACAATGTTGACGATGACGATGACGATGAGCCAAATTCGTTTTCCCCTGCACGCCAAGTCTGGGAGTTGGTGCTGCTACGCCTCAGTTTCTGAGGTTCAAGTCCTCAATGGAAACCCCGACAGCAGAATCTCCGACAGGCGAGAGATCCGTCTCGGTTTGCCCAGCAAAGGTCGCATGTCTTCCGACACCCTCGAACTCCTCAAGGATTGTCAATTGTCAGTGAAGCAGGTCAATCCTCGACAGTACGTTGCTGAAATTCCTCAGCTTTCCAACTTGGAAGTTTGGTTTCAGAGGCCTAAAGACATTGTAAGAAAATTGTTATCNGGAGATCTTGACCTTGGTATTGTGGGACTCGATACAGTCAGTGAATACGGCCAGGGTAATGAAGATCTTATCATTGTCCATGAGGCTCTGGAGTATGGTGATTGCCGTTTATCCCTTGCTATTCCTCAATATGGAATATTTGAAAATATAAATTCGCTGGAGGAGCTAGCAAAAATGCCTCAATGGACAGAGCAAAAGCCTCTGCGAGTTGCTACTGGATTCACCTATTTGGGTCCTAAATTTATGAAAGATAATGGTCTTAAGCATGTGACATTTTCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGATGGGGATAGCTGATGCTATCTTGGACCTTGTAAGCAGTGGAACTACGTTGAGAGAAAATAACTTGAAGGAAATTGAAGGTGGAGTTGTTTTGGAAAGCCAGGCTGTTCTTATTGCAAGCAGGAAATCAATGATAGGACGGGAAGGAGTACTTGAAACAACTCATGAGATGCTTGAAAGATTGGAGGCACATCTGAGGGCCATTGGGCAGTTCACGGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAGTACTGAGCCAACCATCATTATCTGGATTGCAGGGACCCACTATAAGTCCCGTTTTCTGCAAGCGTGATGGAAAGGTATCAGCAGACTACTTTGCCATAGTCATATGCGTGCCCAAGAAGGCACTGTACAAGTCTATACAACAACTGAGAGCGATTGGAGGCAGTGGGGTTCTCATATCACCCTTGACCTATATTTTTGACGAGGAAACTCCTAGATGGCGTCAGCTCCTTTCTAAACTCGGGCTGTAGTCATATGTGTTCAATTTATGGAGTCCTTTGTTGTTGTCCTTCCTCCATACTATCAAAGCGGAACTTCAGAAAACTGGAATTGCTTTTCTTGCTCGTTATTCACAGAGGAGTCACACTTCTGCACCGATTTGCAGGTTGAAAATTTTGTTGTAAGCCTGTAGTTTCTTCAATTGGTCCNCTCAGTAACACTAGTATTGGTTGTTAGATAAGTGACGAGTTCTTTTATNTTTTTTATTTGGGTGCGCAGTTTGAACTTTGAAACGTGGGGAAACTTCAATTGCTGTGGGATTTTCGGTCNTGTAATTTTTAAATTTTCAGTGGATTTTATTTGTTACCTCAATGAACTGGCCATCTTTCAANTGAAGTTTGATGCATATGAAATTAGTAAACTGTGGGAACCCCCGGCATAAAAATTTGGCTGATGAGTAGCATTTTCACCATGATCCAGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	124150	128591	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00765	hisG	EC:2.4.2.17	Biosynthesis of amino acids	map01230
			Histidine metabolism	map00340

Gene Ontology

biological_process
GO:0000105 histidine biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000287 magnesium ion binding

GO:0003879 ATP phosphoribosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009336.1	PF01634.13	HisG	97	275	1.70E-47
Glyur000192s00009336.1	PF08029.6	HisG_C	278	364	1.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.291
SRR1783600	control	58.708
SRR1783602	moderate drought stress	59.047
SRR1811619	moderate drought stress	59.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	97.388
DRR006520	Root Summer glycyrrhizin high producing strain	97.197
DRR006521	Root Winter glycyrrhizin high producing strain	74.478
DRR006522	Root Winter glycyrrhizin high producing strain	72.809
DRR006523	Root Summer glycyrrhizin low producing strain	95.175
DRR006524	Root Summer glycyrrhizin low producing strain	96.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.773
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	73.251
SRR2868004	Drought Stress (root)	50.948
SRR2967015	Control (root)	62.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.860
SRR9715740	Leaf	76.734
SRR9715741	Leaf	61.649
SRR9715739	Root	51.558
SRR9715742	Root	59.704
SRR9715743	Root	60.127

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.854
SRR8749028	MeJA induced 9h	52.623
SRR8749029	MeJA induced 9h	48.101
SRR8749030	Uninduced	21.336
SRR8749031	Uninduced	8.696
SRR8749032	Uninduced	12.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.932
SRR8400027	Control - Root	86.798