Gene detail

Gene detail information of Glyur000192s00009333

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49940.1	3.00E-75	NIFU-like protein 2
NR	XP_004485460.1	2.33E-122	PREDICTED: nifU-like protein 2, chloroplastic-like [Cicer arietinum]
COG	YP_005067121.1	1.00E-31	iron-sulfur cluster assembly factor [Arthrospira platensis NIES-39]
Swissprot	tr\|Q93W20\|NIFU2_ARATH	2.00E-93	NifU-like protein 2, chloroplastic (Precursor)
trEMBL	tr\|V7BRC4\|V7BRC4_PHAVU	1.00E-119	Uncharacterized protein {ECO:0000313\|EMBL:ESW20547.1}

Sequence

Transcript Sequence

>Glyur000192s00009333.1
GTGGTGACAAAGAGCGAGATAGAGAGAAAGGAAAAAACCAAACAGAACAAAACAAACGTGTTTGGAACCGTGATTAGCTTTGTTAGGTCAAAGGATTTTCAGAAACACCACACCGATGGAAGCTGTGGTGGTGCTCAATACACAATCNTCTTACTGCAGAGGCGTTGAACCTCCTTCATGTTCTCGTTCCTCCNCTCCCAAAAAGGGTACGAGGTTTTTTGGCAGCCATGTTTCTTTTAGTAGGAGAAGTAGTAACCTTCTGCGTCCTTCTGCTGGGATTCATTTACCGCAATCTACCCGTCGGTTTGCTATAAAGGCCGTTGCCACTCCCAATTCAGCTGTGGAATTGCCATTAACTGCTGAAAATGTTGAAAGCGCATTGGATGAAATTCGACCATACCTCATTGCAGACGGTGGAAATGTGGCTTTACATGAAATTGATGGCAATGTTGTACGGTTGAAGCTACAGGGTGCTTGTGGTTCGTGTCCCAGTTCTGTTATGACAATGAAGATGGGCATTGAGCGTCGATTAATGGAAAAGATCCCTGAAATAGTGGCAGTTGAACCGGTAACTGATCAAGAAACAGGTCTTGAGCTGAATGAAGAAAATATAGAGANGGTTAGTTCTGTTCTAGAGGAAATAAGGCCGTACCTGGTTGGGGCAGCTGATGGATCTCTTGAATTGGTAGCCATTGATGAACCAATAGTAAAGGTCCGAATCACAGGTCCAGCTGCTGGTGTCATGNCTGTGCGTGTTGCTGTTACACAAAAATTGCGAGAAAAAATACCTGCCATAGCAGCAGTTCAGCTTTTATAAATCTTTTGGTTCAAAGCAAGAATATAACTATCGTGGCATTCTTGTAATTTTTCATGAACAACACTGATGGGAATAAAGTATTACATNTGATGTATAGTAAATTAAATATTAAAATGCTTTTACACAGTGGAAGAAGGCTTCTACTATTAACAGTCAAACTACTGTTTATTTCTTTGTTGTGTCTGTAGCTCAGCAACGTTGAAAACGTGATATTTTTGTAGTGGCTTCCTGCATTACATTGACCGGATTTCAGGAAGCTCGTGTGTGTGTGTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	112537	114675	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016226 iron-sulfur cluster assembly

molecular_function

GO:0005506 iron ion binding

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009333.1	PF01106.12	NifU	85	152	3.10E-25
Glyur000192s00009333.1	PF01106.12	NifU	169	230	1.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.539
SRR1783600	control	11.474
SRR1783602	moderate drought stress	13.375
SRR1811619	moderate drought stress	13.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.092
DRR006520	Root Summer glycyrrhizin high producing strain	16.819
DRR006521	Root Winter glycyrrhizin high producing strain	33.374
DRR006522	Root Winter glycyrrhizin high producing strain	32.811
DRR006523	Root Summer glycyrrhizin low producing strain	18.786
DRR006524	Root Summer glycyrrhizin low producing strain	18.748
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.465

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.034
SRR2868004	Drought Stress (root)	44.218
SRR2967015	Control (root)	43.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	68.783
SRR9715740	Leaf	65.138
SRR9715741	Leaf	71.837
SRR9715739	Root	5.540
SRR9715742	Root	13.785
SRR9715743	Root	12.313

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.368
SRR8749028	MeJA induced 9h	51.513
SRR8749029	MeJA induced 9h	64.989
SRR8749030	Uninduced	83.685
SRR8749031	Uninduced	95.519
SRR8749032	Uninduced	100.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.534
SRR8400027	Control - Root	26.948