Gene detail

Gene detail information of Glyur000192s00009325

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49960.1	0
NR	XP_003592931.1	0	DMI1 protein [Medicago truncatula]
COG	YP_007111138.1	2.00E-84	TrkA-N domain-containing protein [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q6RHR6\|DMI1_MEDTR	0	Ion channel DMI1
trEMBL	tr\|G7IN96\|G7IN96_MEDTR	0	Ion channel pollux-like protein {ECO:0000313\|EMBL:AES63182.1}

Sequence

Transcript Sequence

>Glyur000192s00009325.1
ATGACGCTGGTGAAGGGAACCTTGGTGTTATCGTTTTGGAGGCACTTGTTAGTGAGCACGTCGACAGGGAGTGGCACGCGAGTTTCCCATCGGAACTCCGCCATTCTCGAAGGCTTTAAAGATTTTCCTCTGGTCTCAGTTGAGCACAAGCTGCAAATCGGAGGGGGTGTCGTGCTCGTGGTCCCTGTCGCCGTCGCCGAGGAAGAAGAACAGATTCTGCGTGTGAGTGTGAGCTCAAGAGGAGAGGAGAGGAGAGGCCTAAGATTAAGAATGGCAAAGAGCAATGAAGAATCTCCGAATCTGAATGTGAGCAAGCCGCCGTTGAAGAGGTCAAAGACACTCTCACACAAACCTCAACTGAACCTGAGAGTATCCGTTGACAATGGAATTGGAAGCTCTGCTGCAGCTCCATCAGCTACTACTANCACCAATACCGATTTCTCAGAGCAGCAATGGAACTACCCTTCTTTCCTCGGCACCACCACCAGGAAGAGACGACCATCCGCCAAACCTTCCAACACCCACGACCTTCTCCCTCCAACACTATTGGATCACTCCGACAACCCTCCCAAAACCTCACTTCTCCCACCACCTCCTCCTCCTTCCTCCTCCTTGCCACCCATCAGGAGACCACAACACTATAAGCGCTCTCCCATCTTCTATCTGCTCACTATCACTTGTATTATTTTTGTACCCTATTCCGCTTATCTNCAATATAGGCTTGCGAAACTGGAGGATGAGAAACTTCGCCTGTGTCGTGACATTGATTTTTGTTCCAGCAATGGAAAAACATCTACACAAAAAGATGATGGCTCGTTTTCGTATATCCTGAATGCGGATAGTAGAACAATAGCTTTGTATATTGTGGTGTTCACGCTNGTTTTGCCTTTTGTGTTGTACAAATATCTTGACTGCCTTCCTCAAATAATTAATTTCTTGAGGAGAACGAACGGTAACAAGGAGGATGTACCATTACAGAAGAGAGTTGCTTATATGGTAGATGTATTTTTCTCCATATATCCTTATGCAAAGCTGCTCGCCCTTCTCTTTGCAACTCTATTTCTTATAGCTTTTGGTGGTTTAGCATTGTATGCGGTGACTGGTGGTAGCTTTGCTGAGGCGCTTTGGCATTCCTGGACTTATGTAGCCGACTCAGGAAATCATGCTGAAACAGAAGGAACCGGACAAAGAATCGTCTCTGTCTCAATTAGTTCAGGCGGTATGCTTATATTTGCTATGATGCTTGGACTTGTTTCAGATGCTATATCGGAGAAGGTAGATTCGCTTAGAAAAGGGAAGTGTGAAGTGATCGAAAGAAACCACATACTCATTCTTGGGTGGAGTGACAAATTGGGTTCACTTTTGAAGCAGCTAGCAATAGCAAATAAGAGTGTTGGCGGTGGTGTTATTGTGGTGCTTGCAGAAAAAGAAAAGGAGGAAATGGAAATGGATATAGCAAAGCTCGAATTTGATTTCATGGGGACGTCTGTAATTTGTAGAAGTGGCAGTCCACTTATACTGGCTGACCTAAAGAAGGTTTCAGTTTCAAAGGCACGTGCAATCATTGTATTAGCTTCAGACGAAAATGCAGATCAGAGTGATGCACGTGCTTTGAGAGTTGTTCTTAGCTTAACAGGTGTAAGGGAGGGCTTAAGGGGCCATGTTGTTGTGGAGATGAGTGACCTCGACAATGAACCCCTAGTGAAACTGGTCGGTGGAGAACTCATTGAAACAGTTGTTGCACATGATGTAATTGGACGTTTGATGATTCAGTGTGCTCTGCAGCCTGGCCTTGCACAGATATGGGAGGATATTCTGGGATTTGAGAATGCTGAGTTTTACATCAAAAGATGGCCTGAACTGGATTGTCTTCCTTTCAAAGACATACTAATTTCATTTCCTGATGCAATACCCTGTGGAGTCAAGGTTGCTGCAGATGGGGGAAAGATTGTCATAAATCCAGATGATAATTATATTCTGAGAGATGGTGANGAAGTCCTTGTCATAGCTGAGGATGATGACACTTACGCTCCAGGTCCTCTTCCAGAGGTACGCAAGGGCCTTTTCCCCAGGATACGTGACCCACCTAAATATCCAGAGAAGATATTATTTTGTGGCTGGCGCCGTGATATTGATGATATGATCATGGTTTTGGAAGCATTCTTGGCTCCTGGTTCAGAACTCTGGATGTTCAACGAGGTTCCTGAAAAGGAAAGAGAGAAGAAACTTGCTGCTGGTGGACTAGATGTTTTCGGGCTAGAGAACATAAAGCTTGTCCATAGGGAGGGAAATGCTGTCATTAGGCGGCACCTGGAGAGTCTACCATTGGAGACTTTTGATTCTATCCTTATTCTTGCAGATGAGTCAGTGGAGGACTCTGTTGCTCATTCTGACTCAAGATCCCTAGCTACCCTTCTGCTCATTCGTGATATACAGTCAAGACGTCTACCATACAAGGACACAAAGTCAACTTCTTTGAGGTTATCTGGGTTCTCTCACAACTCTTGGATCCGTGAAATGCAGCAAGCTTCAGATAAATCAATTATAATTAGTGAGATTTTGGATTCTAGGACTAGAAATCTAGTGTCTGTGTCCAGAATCAGTGATTATGTGTTATCTAATGAGCTGGTAAGCATGGCACTAGCTATGGTGGCTGAAGACAAGCAAATCAACCGTGTTCTTGAGGAGTTATTTGCAGAGGAGGGGAACGAGATGTGTATAAAACCAGCAGAATTCTATTTATTTGACCAGGAGGAGCTCTCTTTTTANGATATAATGATTCGGGGTCGCGCAAGGAGGGAGATTGTTATAGGCTATCGCCTGGCCAACCAAGAACGCGCCGTTATCAACCCTTCCGAAAAGTCCGCGCCAAGAAAATGGTCCCTTGATGATGTGTTTGTTGTTATTGCCTCAGGCGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	82720	89991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009325.1	PF06241.7	DUF1012	518	670	2.30E-10
Glyur000192s00009325.2	PF06241.7	DUF1012	428	580	2.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.458
SRR1783600	control	3.716
SRR1783602	moderate drought stress	4.745
SRR1811619	moderate drought stress	5.034

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.735
DRR006520	Root Summer glycyrrhizin high producing strain	4.638
DRR006521	Root Winter glycyrrhizin high producing strain	1.421
DRR006522	Root Winter glycyrrhizin high producing strain	1.360
DRR006523	Root Summer glycyrrhizin low producing strain	6.733
DRR006524	Root Summer glycyrrhizin low producing strain	6.881
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.597
SRR2868004	Drought Stress (root)	10.682
SRR2967015	Control (root)	11.798

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.735
SRR9715740	Leaf	2.759
SRR9715741	Leaf	3.505
SRR9715739	Root	2.331
SRR9715742	Root	6.218
SRR9715743	Root	6.895

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.150
SRR8749028	MeJA induced 9h	4.261
SRR8749029	MeJA induced 9h	1.005
SRR8749030	Uninduced	0.819
SRR8749031	Uninduced	0.487
SRR8749032	Uninduced	0.515

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.237
SRR8400027	Control - Root	10.410