Gene detail

Gene detail information of Glyur000192s00009316

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20270.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003592924.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_001192956.1	1.00E-53	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|O65440\|BAME3_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (Precursor)
trEMBL	tr\|G7IN89\|G7IN89_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES63175.1}

Sequence

Transcript Sequence

>Glyur000192s00009316.1
CCTGTGTGAGAGCTTTTCCCTAATAAAACCATAAAGCAAATATAGATAACAAGTGTAGCCATTTTCTGGCAGAATATCAATCCATCGTCTTCTCGTTCTCTGCTCTCAAAGAAAAGATAGCAAAGTAAAGGAAAAGAGAAAGAGAGAAAAGGAGGGGTTTAGCTCCTTCCTTCCTTGTATTTCAAGACTCTTTCCTTTGAAGATGTTTGATTCCATAAGCCCTCACAGTGACACACCTGATTTAGTTTCTCAGATTCCCGTCACTTTTCTACCCTTTTGCCGAGCGTTTAAAACCTGTCGTCTTGGCTTCGAGTACTTCCAAACTCAATCTTGCTAAACAAACATATTTCCAACAACAACAAAAACATGGTCCCCTTGACCCTGGTTGTTTTCACTCTGTTTTCTCTTCTGGGTTCCCCTGTCTTTGCTTCATCCTTGCTCGGCGATTTCCATGTCCTAGTCTCACTTAGGGAAGGATTCCAATTCCCAAACCCGGTTCTTAACACTTGGAACACTTTCAATTTCAGCTCAGTTTGTTCATGGGTTGGAATCCAATGCCACCGGGGGCGAGTTGTGTCGGTGGACTTAACAGANATGAATCTGTGTGGCTCTGTTTCCCCTGCAATCTCATCACTCGATAGGCTCACACACCTCTCCCTCGCAGGCAACAACCTAACCGGCACCATTCACCTCACCAACTTGACCAGCCTTCAGTTTCTGAACATCTCCAACAACCAGTTCAGTGGCCACCTGGATTGGGACTACTCCACCATGGACAACTTGCAAGTCGTTGACGTCTACAACAACAACTTCACTTCCTCGCTTCCATTGGGGCTTCTGAGTCTGAAGAGGCTCAGGTACTTGGATGTTGGTGGGAACTTTTTTTACGGTGAAATCCCAAAAAGCTACGGGAATCTAGTTTCGCTGGAGTATCTCTCACTGGCAGGAAATGATATCCGTGGGAAAATCCCGGGTGAGTTGGGGAATCTCACTAACTTGAGAGAGATGTACTTGGGCTACTACAACTCTTATGAAGGTGGAATCCCAGTGGAGTTTGGGAAGTTGGCAAATTTAGTCCACATGGATCTCTCAAGCTGTGATTTGGATGGTCCAATTCCAAGAGAGTTGGGGAACTTGAAGGAGCTTGACACCCTTTACTTGCACATCAATCAGCTCTCGGGTTCTATACCAAAGCAGCTTGGAAACTTGACTAACTTGGTGAACCTTGATCTCTCCAGCAATGCACTCACTGGTGAAATCCCATTTGAGTTCATCAACCTCAAGAAGCTCAAGCTTTTCAATCTCTTCCTGAACAGGTTACACGGCTCCATACCCGACTACATTGCTGACTTGCCTGATTTGGAGACGCTTGGGCTGTGGATGAACAACTTCACTGGAGAAATTCCACAGAACCTTGGCCTCACTGGGAAGCTTCAAGTGCTTGACTTGTCCTCCAATAAGCTCACCGGTGTGATTCCACCCCATCTTTGTTTCTCAAATCAGCTCAGGATTCTGATTCTTCTCAATAATTTCCTCTTTGGGCCCATACCCGAAGGTGTGGGAACATGTTACAGTCTCATTAGGGTAAGGTTAGGACAGAATTACCTTAATGGAAGCATTCCAAATGGCTTTCTTTACCTCCCTAAGCTAAATTTAGCCGAGTTACAGAACAACTACTTATCAGGAACTTTGTCAGAAAACGCTAATAGTTCCTCCCAGCCAGTTAATTTAAGCCAGCTTGATTTGTCAAACAATGCCTTGTCCGGTCCTTTACCACATTCACTGTCAAATTTCTCTTCCATCCAAATCCTTTTGCTGAGCGGGAACCAATTCTCAGGTCCAATCCCACCCTCCATTGGAGGGCTCAATCAAGTGCTGAAGCTTGACCTCAGCAGGAATGCATTGTCCGGAGAGATTCCACCTGAAATTGGGTACTGTGTCCATCTCACATACCTTGACATGAGCCAGAACAACCTCTCCGGCTCCATCCCACCCGTGATTTCCAACATCCGCATTCTGAATTACCTCAACTTGTCCAGAAACCATTTGAACCANACCATCCCAAAATCGATAGGGACCATGAAAAGCCTCACCGTTGCCGATTTCTCCTTCAATGAGTTCTCCGGAAAATTGCCAGAGTCGGGGCAATTTTCCTTCTTCAATGCCACATCTTTCGCGGGTAATCCTCAACTCTGCGGTTCTCTCCTGAACAATCCATGCAACGTGACCAGAGTCGCTTCCCCACCGGGAAAAGGCCCCGCATATTTCAAGCTGATATTTGCCCTTGGCCTGTTGATGTGCTCCCTGGTGTTTGCCATTGCTGCAATCATAAAGGCCAAATCATTCAAAAAGAAAGGCCCCGGTTCGTGGAAGATGACGGCGTTCCAGAAGCTGGAATTCACGGTTTCGGACATACTGGAATGCGTGAAGGATGGGAACGTGATTGGGAGAGGAGGTGCGGGGATCGTTTACCATGGGAAAATGCCAAATGGGGTGGAAATTGCGGTGAAGAAANTACTTGGGTTTGGCGCAAACAGCCACGACCATGGGTTCAGGGCTGAGATCCAAACGCTGGGAAACATAAGGCACAGGAACATAGTGAGGCTGCTTGCGTTCTGCTCCAACAAGGAGACCAACCTGCTGGTGTATGAGTACATGAGGAATGGGAGCTTAGGGGAGACATTGCATGGGAAGAAGGGCGCATTCTTGAGTTGGAACTTTAGGTACAAGATCTCCATTGACTCGGCGAAGGGACTCTGCTACCTTCACCATGATTGCTCACCCTTGATCGTCCACCGAGACGTCAAGTCCAACAACATTTTGTTGAATTCCAATTTCGAAGCACACGTCGCTGATTTCGGGCTGGCAAAGTTCTTGGTCGATGGCGGCGCCTCCGAGTACATGTCCTCTATTGCTGGCTCCTATGGCTACATTGCACCCGAATATGCTTATACATTGAGGGTGGATGAAAAGAGTGATGTCTATAGTTTTGGAGTTGTTCTATTAGAGCTTCTAACNGGGAGGAAACCGGTGGGGGATTTCGGAGAAGGAGTGGATCTAGTACAATGGTGCAAGAAAGCAACCAATGGGCGCAGAGAAGAGGTTACTAACATAGTTGATTCAAGGCTTGCGGTGGTGCCCAAGGAGGAAGCCATGCACATGTTCTTCATTGCCATGCTATGCTTGGAAGAGAACAGTGTGCAGAGACCCACCATGAGGGAAGTGGTTCAGATGCTCTCTGAGTTCCCTCGGCGTTCACCCGAGTACCAATCTTCTTCCTCTAATAATTATCCCACTACTACTACTACTACTACTACTACTACTCATCCACCAAGCAAAAAGCTTGAGAAAGACAAACCTTGTCCTCCCACTTTTAAACAAGACCTTTTGGTTTAATTAGTTCACAATGCAAATTTCTTTTTTCTTCATTCCCTTTTTCCTTTGGGTATATTAATCAATATTCCTGTTAATCATATATATATGTTAATTGGCTTCGTTTTGTAATAGCCTTGCTATGTGGAAAAAAAACCTTAACTTTCTTTTGGGAGAGGAGAGGGGTTAGATTTTTCTTTAGTCATATAGAGAGATTTGGTAACCAAAAGGAGGGGGTAGTA

Protein Sequence

>Glyur000192s00009316.1
MVPLTLVVFTLFSLLGSPVFASSLLGDFHVLVSLREGFQFPNPVLNTWNTFNFSSVCSWVGIQCHRGRVVSVDLTXMNLCGSVSPAISSLDRLTHLSLAGNNLTGTIHLTNLTSLQFLNISNNQFSGHLDWDYSTMDNLQVVDVYNNNFTSSLPLGLLSLKRLRYLDVGGNFFYGEIPKSYGNLVSLEYLSLAGNDIRGKIPGELGNLTNLREMYLGYYNSYEGGIPVEFGKLANLVHMDLSSCDLDGPIPRELGNLKELDTLYLHINQLSGSIPKQLGNLTNLVNLDLSSNALTGEIPFEFINLKKLKLFNLFLNRLHGSIPDYIADLPDLETLGLWMNNFTGEIPQNLGLTGKLQVLDLSSNKLTGVIPPHLCFSNQLRILILLNNFLFGPIPEGVGTCYSLIRVRLGQNYLNGSIPNGFLYLPKLNLAELQNNYLSGTLSENANSSSQPVNLSQLDLSNNALSGPLPHSLSNFSSIQILLLSGNQFSGPIPPSIGGLNQVLKLDLSRNALSGEIPPEIGYCVHLTYLDMSQNNLSGSIPPVISNIRILNYLNLSRNHLNXTIPKSIGTMKSLTVADFSFNEFSGKLPESGQFSFFNATSFAGNPQLCGSLLNNPCNVTRVASPPGKGPAYFKLIFALGLLMCSLVFAIAAIIKAKSFKKKGPGSWKMTAFQKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKXLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGETLHGKKGAFLSWNFRYKISIDSAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFLVDGGASEYMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRKPVGDFGEGVDLVQWCKKATNGRREEVTNIVDSRLAVVPKEEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRRSPEYQSSSSNNYPTTTTTTTTTTHPPSKKLEKDKPCPPTFKQDLLV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	51498	57036	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009316.1	PF08263.7	LRRNT_2	26	64	0.00011
Glyur000192s00009316.1	PF12799.2	LRR_4	92	126	7.60E-07
Glyur000192s00009316.1	PF00560.28	LRR_1	186	208	0.75
Glyur000192s00009316.1	PF00560.28	LRR_1	283	305	0.68
Glyur000192s00009316.1	PF00560.28	LRR_1	355	374	0.021
Glyur000192s00009316.1	PF00560.28	LRR_1	454	475	0.86
Glyur000192s00009316.1	PF00560.28	LRR_1	478	500	0.99
Glyur000192s00009316.1	PF00560.28	LRR_1	526	547	0.075
Glyur000192s00009316.1	PF00560.28	LRR_1	551	570	0.81
Glyur000192s00009316.1	PF07714.12	Pkinase_Tyr	690	957	2.00E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.684
SRR1783600	control	5.641
SRR1783602	moderate drought stress	6.688
SRR1811619	moderate drought stress	6.486

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.680
DRR006520	Root Summer glycyrrhizin high producing strain	5.660
DRR006521	Root Winter glycyrrhizin high producing strain	0.278
DRR006522	Root Winter glycyrrhizin high producing strain	0.240
DRR006523	Root Summer glycyrrhizin low producing strain	5.324
DRR006524	Root Summer glycyrrhizin low producing strain	5.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.839
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.798

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.192
SRR2868004	Drought Stress (root)	18.118
SRR2967015	Control (root)	19.836

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.038
SRR9715740	Leaf	1.780
SRR9715741	Leaf	2.738
SRR9715739	Root	3.794
SRR9715742	Root	9.965
SRR9715743	Root	8.123

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.110
SRR8749031	Uninduced	0.042
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.339
SRR8400027	Control - Root	6.609