Gene detail

Gene detail information of Glyur000191s00015633.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53050.1	6.00E-103	Protein kinase superfamily protein
NR	AES62313.2	0	cyclin-dependent kinase [Medicago truncatula]
COG	YP_003371239.1	1.00E-25	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	2.00E-127	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|G7IBV9\|G7IBV9_MEDTR	0	Cyclin-dependent kinase {ECO:0000313\|EMBL:AES62313.2}

Sequence

Transcript Sequence

>Glyur000191s00015633.1
TGTCTCTGTGTCTTTGTGTCTATGTCCTTCTCCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCAAGTCTCAACCTTTCGCTTCGCTTCGCGGTGACTCTGTCTGATTCTGATTCATTCATTCATTCATTGAAGGACACACTACAATAGTAGGAACGAACGGCGCAGTCATTTTCTGTCTGCGGAGAACCAGAAAGCAAAGCATACCAAAGTAGAAAGAAAAAAGGGTCCATTGGCTTGGTTGTGCTCTGTGCTCTGTGCAGCCACACCCCCAACATTCCAAATGTGCCGGCCATGGTCGGCTTCTCACCCTCACATCATTCTCTCTCTTCCCCTCTCTCTCCTCTCCTCCATCACTCTCATCACCAATCCTTTTCTGTCTAATTCCTTCTTTGGAGCTACAGCTACAACCATAAAAGAGGAAGAGGAAGAGGAAGGGGTGTTATGGGGTGTGTTCAGGCCAAGCCATTGGATTTGGAAGGTTCTTCAGACTACCACTACCACAGGGGCCTTGATAGGTTGAAGATGGATAATGGGTATGTTTCCAGTGCTGATTTTGTTCCTCACAGGAGATCCACTGGTGGTCAAAGACCACAACTTGATGATCATGACCATTTGGTACTTCAGAGGGAAGTAGTAGATGTAGAACAACCCAGAAAGCATAAAGGTGTTGTTGAGACTGCAGGTGTTGGCAATATTATTAATGCTGCTGAAATTAGGAGGAAAGGCCTTGCTGTGGGGAAGAAGAGAGATGGTCATGATGATAAGAAGAAGCCNTTGAACTTGAATAAGTGCTTTGAGGATGACATGGTTGATGGTTGGCCCAGATGGTTCGTTGATAATGTTCCCACACAGGCCTTGGCTGGCTTGGTTCCCAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATCGAGACACGGGAGAAATTGTGGCCCTCAAAAAGGTCCGCTTCAACACATCAGAGCCCGAAAGCATTAAATTTATGGCAAGAGAAATCATGCTATTGCAGAGATTGGATCACCCCAATGTAGTTAAACTTAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGACTTCATGCAAACAGATTTGGCAAGAGTTATTGCTCGCCCCGGAGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTCCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAGGGGTCAAACCTTCTTATTGATAAAAATGGGATGCTTCAGATTGCAGATTTTGGGCTTGCCAATTATTATAGTCCAAACCAAGACCAGCCTCTCACAAACCGGGTTGTGACACTATGGTACAGAGCCCCTGAGTTGTTGTTAGGTTCCACAAATTATGGTGTTGGTATTGATCTATGGAGTGCTGGATGTCTCCTGGCAGAAATGCTATGTGGCACACCATCAGAAGAGTATTGGAGAAAGTTAAAACTTTCCACAACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTGTAGNAACTTTCAAGGATCTCCCCCCATCTTCTTTAGGTCTTTTGTGTACTCTTCTTGCTTTAGATCCTGCATTCCGTGGCAGTGCTTCTAAGGCTCTTAAAAATCAGTTTTTCTTTACAAGCCCATTGGCTTGTGATCTCTCTGGTCTGCCAGCAATCTACAAAGAAGATGATGAGCTTATTCAAGCCAAGGAACAGATCAAGTACATTAACTCTAAAATCAGGCGTTCTCATACATATCTGGAGCGTCGCAAGAATTTAGTATCTAATAGGACAATAAAACATACTGTATCATCTAAAGAGGAATTGAGAAGGAATGCTGAGCCTGATGAAACTAATGTTCCAAGTGAAGAACCGGATAGTACAACAAGTAGTACCTCATCTAGTGTGAACCACCCAGCTGGAGCTAGGGACCACTCACCTTTCCTTCTCTCTCCATTGCTGGCTTCAGATCAAAAGCTGCCCCACAAAATCCATCGCCATGCTAATGTTGGTGAAAAAAACACCAAGAACCTTCCTCCATTATACAAGTCAAAACCAAATGCAACCAAGAAAGATGACAGCAGATACAGACAAGACCAGGTTTTCAGGTCTGCTTCCACCAGAGAATTTANAAAGTTAAAACGGGAGGAACATTTACTCTTTGAAATTGATGACTAGGCAATCCGAGATTATTATGTAAACCCCATAATGGTTATTTTTTTGTTCTTATTTTACAATTTACATTTTGATGTATTTTAATAGTTCCTCTACATATTCTTTGCCCCGGTTGGTGTGACTTGATTTGTCTACCCCTTCTCCTAAAATTAAGTTCCTTCTGTTTCAATAAGCATCAACTCAAGTTGCATGCTTATCTAAATCTCTTTGACTAGCTTGTAAATCAACTACACTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00191	162469	167704	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000191s00015633.1	PF00069.20	Pkinase	150	411	1.70E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.692
SRR1783600	control	9.736
SRR1783602	moderate drought stress	5.581
SRR1811619	moderate drought stress	5.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.346
DRR006520	Root Summer glycyrrhizin high producing strain	13.715
DRR006521	Root Winter glycyrrhizin high producing strain	4.110
DRR006522	Root Winter glycyrrhizin high producing strain	3.945
DRR006523	Root Summer glycyrrhizin low producing strain	38.576
DRR006524	Root Summer glycyrrhizin low producing strain	38.688
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.027
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.980
SRR2868004	Drought Stress (root)	15.826
SRR2967015	Control (root)	11.442

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.875
SRR9715740	Leaf	3.144
SRR9715741	Leaf	4.830
SRR9715739	Root	8.047
SRR9715742	Root	26.862
SRR9715743	Root	23.445

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.503
SRR8749028	MeJA induced 9h	57.482
SRR8749029	MeJA induced 9h	41.826
SRR8749030	Uninduced	59.751
SRR8749031	Uninduced	20.397
SRR8749032	Uninduced	13.254

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.195
SRR8400027	Control - Root	15.131