Gene detail information of Glyur000191s00015624 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11890.1 | 2.00E-46 | |
| NR | XP_003603154.1 | 7.05E-156 | hypothetical protein MTR_3g104460 [Medicago truncatula] |
| trEMBL | tr|G7J7N4|G7J7N4_MEDTR | 3.00E-156 | Chaperonin CPN60-like protein {ECO:0000313|EMBL:AES73405.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00191 | 104658 | 105440 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000191s00015624.1 | PF03168.8 | LEA_2 | 124 | 224 | 5.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.167 |
| SRR1783600 | control | 20.537 |
| SRR1783602 | moderate drought stress | 14.275 |
| SRR1811619 | moderate drought stress | 14.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.783 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.580 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.361 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.388 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.935 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.319 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.538 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.307 |
| SRR2868004 | Drought Stress (root) | 31.854 |
| SRR2967015 | Control (root) | 28.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.516 |
| SRR9715740 | Leaf | 17.642 |
| SRR9715741 | Leaf | 17.385 |
| SRR9715739 | Root | 18.857 |
| SRR9715742 | Root | 20.505 |
| SRR9715743 | Root | 21.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.851 |
| SRR8749028 | MeJA induced 9h | 33.141 |
| SRR8749029 | MeJA induced 9h | 26.216 |
| SRR8749030 | Uninduced | 2.182 |
| SRR8749031 | Uninduced | 0.454 |
| SRR8749032 | Uninduced | 1.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.593 |
| SRR8400027 | Control - Root | 39.034 |