Gene detail

Gene detail information of Glyur000191s00015622

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11870.2	3.00E-70	Alkaline phytoceramidase (aPHC)
NR	XP_007136829.1	2.18E-163	hypothetical protein PHAVU_009G077800g [Phaseolus vulgaris]
trEMBL	tr\|V7AW36\|V7AW36_PHAVU	8.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:ESW08823.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00191	96132	100855	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006672 ceramide metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000191s00015622.1	PF05875.7	Ceramidase	60	198	5.90E-08

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.400
SRR1783600	control	1.394
SRR1783602	moderate drought stress	0.704
SRR1811619	moderate drought stress	0.973

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.133
DRR006520	Root Summer glycyrrhizin high producing strain	1.193
DRR006521	Root Winter glycyrrhizin high producing strain	0.768
DRR006522	Root Winter glycyrrhizin high producing strain	0.739
DRR006523	Root Summer glycyrrhizin low producing strain	0.137
DRR006524	Root Summer glycyrrhizin low producing strain	0.115
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.993
SRR2868004	Drought Stress (root)	2.704
SRR2967015	Control (root)	3.902

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.158
SRR9715741	Leaf	0.041
SRR9715739	Root	0.287
SRR9715742	Root	0.699
SRR9715743	Root	0.713

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.564
SRR8749028	MeJA induced 9h	2.883
SRR8749029	MeJA induced 9h	2.021
SRR8749030	Uninduced	0.299
SRR8749031	Uninduced	0.792
SRR8749032	Uninduced	0.549

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.242
SRR8400027	Control - Root	6.881