Gene detail

Gene detail information of Glyur000191s00015621

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10970.1	4.00E-129	zinc transporter 4 precursor
NR	XP_004501470.1	0	PREDICTED: fe(2+) transport protein 3, chloroplastic-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8LE59\|IRT3_ARATH	0	Fe(2+) transport protein 3, chloroplastic (Precursor)
trEMBL	tr\|G7J7M9\|G7J7M9_MEDTR	0	ZIP zinc/iron transport family protein {ECO:0000313\|EMBL:AES73400.2}

Sequence

Transcript Sequence

>Glyur000191s00015621.1
TAAAAAACAAAAAACATCACGTAATGTAAAGAGAGAGAGTAGAGAGAGAGAGAGGTGAGGAAAGAATGTCGACACTCTCGCGCTCATTTCAAAGCAAAAAAGTCCTAACCGAAGCATCCGCCTCGTCTTCTCCCCTTTCTCTGTACTCCATATGTCGACACTCCTCCCTCCTTCTCCAACACTCCATGCCATTGCCCTGTTTTGGGATCACGTTCCCAATCTCAACCCTTCCCCCTGTTTCTTTCGTTTTCCTTATTCTTATTTATATTGCCACCACTTTATCAACTTGAGATTCATCATAGTAGTAGATTGATTCCCTTTCTCTTCATCTCATTATCTCGTCACCCTATAACTAGAAGCCTCCTCCTCTTTTATCTTCCCACCAATTTCGCCTCACTCCCATGTTTTTTATTGAGGATCTCTGGCCACTGATCCAGCATCTCGTTGGAAACACTCGCCTCTCCTCAGAAAAAGAATCGACGATGGGGAGCACAAGCTGTGGAGGCACCGAGTCAGAGCTGTGCCGAGACGACTCGGCCGCGTTCGTCCTCAAGTTCGTGGCAATCGCATCCATCCTCTTGTCNGGCATGGCCGGAATCGCTATTCCCCTCATCGGAAAACACCGCCGGTTCCTCCGCACCGACGGGAACCTCTTCGTGGCCGCGAAGGCATTCGCGGCGGGGGTGATTCTCGCAACCGGTTTCGTCCACATGCTCTCCGACGCTTCGGAAGCGCTCAACAGCCCCTGCCTGCCGGAGTTCCCGTGGTCTAAGTTTCCGTTCACGGGGTTCTTCGCCATGATGGCGGCGCTCTTCACGCTCCTCCTTGACTTTGTTGGGACTCAGTACTACGAGCGGAAGCAGGGGCTGAACCGTGCCGCCGATGAGCAGGCACGGGTCGGGTCGACGGAAGAAGGGATCGTGGAGTGGTCTTCCGGGAAGGTGTTCGGGGAAGAGGAGAGCGGGGGAATGCACATTGTGGGGATGCATGCACACGCGGCGCACCATAGACACAACCACCCTCATGGCCACGACTCTTGCCACGGCATTGGCGTCTCCAAGGAACACGACCATGCGCACGCCCACGCCCTCACACCTGAGGAAGATACTGACGTACGACACGTCGTCGTTTCCCAGGTGTTGGAGCTTGGGATCGTATCACATTCGGTGATAATTGGGTTGTCTCTGGGAGTTTCACAAAGCCCATGTGCCATAAGGCCTCTGATTGCGGCATTGTCCTTCCATCAGTTTTTTGAAGGGTTTGCACTTGGAGGGTGCATCTCCCAAGCCCAGTTCAAGACATCATCGGCAACAATAATGGCTTGTTTTTTTGCACTGACTACGCCGGTGGGTGTTGGCGTTGGAACAGGCATTGCTTCGGTGTATAACCCTTACGGTGCGGGTGCACTCATCGCGGAAGGGATCCTGGACTCGTTGTCAGCAGGGATTTTAGTGTATATGGCTTTAGTAGACTTGATAGCAGCTGATTTTCTTAGCAAAAGAATGAGTTGTAACTTTAGGCTGCAGATAGTATCTTATTGTATGCTTTTCCTTGGAGCTGGGTTAATGTCTTCACTCGCAATATGGGCATGAACCCTTCCCAATATATGTCGTTCAATGTTGATTCATGTTTCTTTAATTATCTTTCTAAGCTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00191	90409	93066	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

GO:0071577 zinc II ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005385 zinc ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000191s00015621.1	PF02535.17	Zip	50	393	2.60E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.616
SRR1783600	control	6.525
SRR1783602	moderate drought stress	4.119
SRR1811619	moderate drought stress	4.025

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.990
DRR006520	Root Summer glycyrrhizin high producing strain	11.054
DRR006521	Root Winter glycyrrhizin high producing strain	13.282
DRR006522	Root Winter glycyrrhizin high producing strain	12.728
DRR006523	Root Summer glycyrrhizin low producing strain	6.999
DRR006524	Root Summer glycyrrhizin low producing strain	6.999
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.167
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.192

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	143.512
SRR2868004	Drought Stress (root)	163.547
SRR2967015	Control (root)	93.313

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.613
SRR9715740	Leaf	25.460
SRR9715741	Leaf	12.809
SRR9715739	Root	19.746
SRR9715742	Root	20.095
SRR9715743	Root	20.747

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.783
SRR8749028	MeJA induced 9h	0.924
SRR8749029	MeJA induced 9h	2.977
SRR8749030	Uninduced	0.115
SRR8749031	Uninduced	0.020
SRR8749032	Uninduced	0.412

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.834
SRR8400027	Control - Root	14.379