Gene detail information of Glyur000191s00015612 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20430.1 | 7.00E-47 | |
| NR | XP_003523639.1 | 5.23E-127 | PREDICTED: uncharacterized protein LOC100793038 [Glycine max] |
| trEMBL | tr|K7KI57|K7KI57_SOYBN | 2.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G05241.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00191 | 35573 | 39503 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000191s00015612.1 | PF10258.4 | RNA_GG_bind | 125 | 206 | 4.70E-24 |
| Glyur000191s00015612.2 | PF10258.4 | RNA_GG_bind | 89 | 170 | 3.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.849 |
| SRR1783600 | control | 2.787 |
| SRR1783602 | moderate drought stress | 5.489 |
| SRR1811619 | moderate drought stress | 5.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.794 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.839 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.103 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.411 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.829 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.027 |
| SRR2868004 | Drought Stress (root) | 10.066 |
| SRR2967015 | Control (root) | 10.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.460 |
| SRR9715740 | Leaf | 9.812 |
| SRR9715741 | Leaf | 7.634 |
| SRR9715739 | Root | 1.903 |
| SRR9715742 | Root | 5.119 |
| SRR9715743 | Root | 3.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.364 |
| SRR8749028 | MeJA induced 9h | 20.353 |
| SRR8749029 | MeJA induced 9h | 21.489 |
| SRR8749030 | Uninduced | 26.041 |
| SRR8749031 | Uninduced | 27.565 |
| SRR8749032 | Uninduced | 23.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.381 |
| SRR8400027 | Control - Root | 9.957 |