Gene detail information of Glyur000191s00015611.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32940.1 | 0 | gamma vacuolar processing enzyme |
| NR | XP_004501477.1 | 0 | PREDICTED: vacuolar-processing enzyme-like [Cicer arietinum] |
| COG | YP_004254713.1 | 5.00E-23 | Legumain [Odoribacter splanchnicus DSM 220712] |
| Swissprot | tr|P49043|VPE_CITSI | 0 | Vacuolar-processing enzyme (Precursor) |
| trEMBL | tr|I1K8B5|I1K8B5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G05350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00191 | 29783 | 34370 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01369 | LGMN | EC:3.4.22.34 | Lysosome | map04142 |
| Antigen processing and presentation | map04612 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000191s00015611.1 | PF01650.13 | Peptidase_C13 | 56 | 326 | 1.70E-109 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 136.433 |
| SRR1783600 | control | 136.890 |
| SRR1783602 | moderate drought stress | 223.827 |
| SRR1811619 | moderate drought stress | 221.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 251.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 247.728 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 153.418 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 148.179 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 257.541 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 259.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 167.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 166.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 129.655 |
| SRR2868004 | Drought Stress (root) | 183.215 |
| SRR2967015 | Control (root) | 190.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 174.694 |
| SRR9715740 | Leaf | 218.308 |
| SRR9715741 | Leaf | 184.764 |
| SRR9715739 | Root | 190.132 |
| SRR9715742 | Root | 139.036 |
| SRR9715743 | Root | 153.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 96.292 |
| SRR8749028 | MeJA induced 9h | 114.926 |
| SRR8749029 | MeJA induced 9h | 76.679 |
| SRR8749030 | Uninduced | 93.747 |
| SRR8749031 | Uninduced | 80.609 |
| SRR8749032 | Uninduced | 114.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 169.058 |
| SRR8400027 | Control - Root | 173.501 |