Gene detail

Gene detail information of Glyur000190s00015734

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38440.1	6.00E-101	SCAR homolog 2
NR	XP_003623483.1	0	Protein SCAR2 [Medicago truncatula]
Swissprot	tr\|Q5XPJ9\|SCAR2_ARATH	4.00E-112	Protein SCAR2
trEMBL	tr\|G7KV36\|G7KV36_MEDTR	0	SCAR2, putative {ECO:0000313\|EMBL:AES79701.1}

Sequence

Transcript Sequence

>Glyur000190s00015734.1
AACAAAAGAAAAAAAAACTCTCTCTCTCTCCTCCATTTCCATGGTGGAACCAACGGAAAACGCAGCGTCGCCGGAAGGAGGATCGGAGAAAGTAACCAGTTAACTGAAATTGGAGCAGAATTAGGGCTTCTCCATAGCTTGAATTTGAAGAATGCCAATATCCAGGTACCACATTCGGAGCGNGCACGGGTTGGCGGATCCGGAGCTGTACCGTGCCGCCGACAANGACGACGCCGAAGCTCTCCTCGAAGGCGTCGCCATGGCCGGACTCGTCGGTCTCTTGCGCCAGCTCGGAGACCTTGCTCAATTTGCCGCTGAGATGTTCCATGACTTGCATGAAGAANTAATGGNTACTGCTGAAAGAGGCCACAGTCTTGTGTCTCGTGTTCAACAGCTTGAGGCTGAAGTTCCTGCACTTGAGAAAGTTTTTTTGTCGCAAACTCATCATTCAACATTTTTTGCAAATGGAGGTTNAACGACTCAGTCTTTTATTTGGATTGACTGGCATCCTAATCTTCGGTCTGAACAGAATCTTGTTACACGTGGAGACTTACCTAGATTTATATTAGATTCATATGAAGAATGCCGTGGTCCACCCAGACTCTTCCTTCTAGACAAGTTCGATGTGGCTGGTGCTGGGGCATGTCTGAAGCGTTATAGTGATCCATCATTCTTTAAAGCAGAGTCTGCTCCCTCTGTAACAGCAACAGTANATGTTCACAGAGAAAAGAAAATTCGTAAAGTCAGGCAGAAGAAAGGAGCATGGCCGAGGAACAGTGAAACCCCTGAAGTTGTATCATCNCATTCAAAACTTCATCAGTTGTTTCTTGAGGAGCGTATTGAGAATGCTTGTAGTGATCCTGCTCGTACGGTGAAGTTGAGAAAAAGACAATTGGATAGATTTGCAGTTGAATNGAAATCTGGGAAAAGTTACATGGAGAAATTTCTGGAAATGCCCTCACCTGATAATAAAATGGTTTGTGAATCTTCAATCATTCCACTGCCTGTGAAATTGATGTCAGATGACACTAGTGAAACTGGGATTAAAATACTTGAAATCAGTAGCATTTCTCCTGTGAGAAGTTCTTTGGGAAATGAAAAGGAACGTTCTTCACCAAATGAGCAGGAATTGGAACTGAATCCATGCTCAGAAATGGATAGGGAGACAAATGGATATCTTGTGAAGGTGCATGAACAAATCTCTGCTGGNGTGACAGATGAAATGTCTTCTAATCATCTCAAGGTACCTGATGAAACAGAATTGGGGGATGATGAACAAAAGAAAAGAGAATGCAGACTAGATGGCTACCGTTCTGATGATGGAACCAGTGAGGTTGATGATTATATGGATGCATTAGCTACCATAGACTCNGAATTAGATACAGACAATGAGTGTAGACCTAAAAAAAGCTTATTGAATGTTCAAAAGGTAACTGATTCAAATGGCGAAGAAGGACATCGACTGCAAGCTCAATTTTCAGATTCTCCGTCATTTGGAGACTCCTCGATATCTGAGGAAACTAGTTCATTCGAACAAGACAGAAATGAAGAGCATAATGAAGTGCAAGCTTGGTTGNCAGATTCTCAGTCAACAGGAATCCCCTGTGCGTCAGATGATAATAGTTCATTCAGAAGAGATAGAAATGAAGAACATACTCAACTGCAAGCACAGTTCTCCGATTCTAAATCTATTAGAAACTCCTCATTAGAGATTGAAAATATGCCATCCAACCAGGTTCCCCAAACTGTTGAATTGCCAAATATCCATGGTGAGTTTGTCACACATGATGNTACACATGATCAAGGGGAAGTGATATCCGATTCTAAACCAGTCACTTATGGTTCATGTCTGATGGATTCAGGATCTTTATTGTTGTCTTCAGATCTTGGAGCCACCTCACTAGTGTCCTTACCCACAGGGACTCAATCAGATGAAACTCCATCTGTTCCTGTTGAACTTCATTTAAGATTAGAAGATGATAAAGACAGGAAGTGTCTTGTTGAATCTATAGCTGCAGTTCCTTGTGCTTTCTCCCCAATAAAAGATGATACTTGNCCATTGGTTTCTTTTGATAACAATTCTTTGAATAACTTGGATGTTTGTGATCCATATGTCCATTCCAATGCTCTGTTACAAGTTTCTAATGATTTAAACTTAGCTCATGAAGGTGAATGTGGTGATCATTCTGNTATCAAAGTGTTGCAGGCAGAATCTGTTAATAAATACAATTCTGAAATTTCGGTTGTTGGAGACATTGGTTCACGAGGGGAGGATGATAACAAGCTGCTGCACTATGACCAAGATTTAAAATCTGAGGATGATATTATAGCAACCGAACTTAACTCAGAAGATTTATTTCCTATTGTGGAGACTACAGTACAGAGCAGCTTTACAGGGGACCCATGCTCTGATTATATACACGGAAATCCACAGGATGAACCAGATTTGGCAGAATTTGATCCTGATCAGCAATCAAATTTTGACGAGGTACCAAGGATAATTCCTTCTGATGAAATAAATGGATCCACCTGCAGTTTGGATCCAGTTGAAGATGATGGTCATATTAAACATCCACCTTCCCCTGATTATACAAGGCAGGATAATCATGTCATGGTAAATGATATGTTCTCNGTAAAAGTTCAGTCAGAAGATCAGACTGTATCTGCTCTTCCTTCTGTTGATACTGCTGAGAATGATGAAAGTATTGTTAATTGTCTAGCTTCAGATTCTATTTCTTCCCCACCAAGGAATCTTTCAAATTTTCATGAACCTTTCCTGGGGTTTTCAGATTCCCATCAGATGGAAATGGAATCCAATGAGGTAGAGTTGACAAAAGTTTCTGTAGACTTGAATGCAGAGAAGGGGGAAAATCAACTGGAACCATCTTCAAATATCATATCTTCTCCGATGAGTAGTCTTACAAAGTTGGAAGAATCTCTTTCTACTTTTGCAGATCCTCATGAGAAAAAGATGGAAGTCAATGAAGCAGTTGCAAGAGAATCTTTGAGAGAGTTATCAGCTCATAAAGTAGTGGATCAACCAGAAATTGCTTTTACTGATGCACAGTTAAACCTGAACAGAACAGTTCCTTGTGATCCTTCTGATTCTGGAATATGTACTAATATTCAATATTCATCACTTGAGGAGAAAAGCCAATATGGTTCTTCTCTCAATGGTATGAAAATGGTGACTGAATGTTCAGAGCTAGATTCTCAGAAGGCAGAATCTATACATGTTTGCCAGAATGATCTACAGAACAGCAAAGGTAGTTTGTCACCACCTTCCTGTAATCAAGATGTGGGATTTCTGCTCAGAAATGAAGAAAATTGTACCCCAGTGANATTTCAACCTCAACCGATGCAGATATCATATCAGTTGGAGCAAGAANGAATCTCTCATGCTGCTTCTGAGTTTTCTGCTGAAGTTCATCCAGATAGGCCTTCACGTGTTTCCTCATCTGGTCAGCAGATTAACCCAACAAAACATGTCATGGATCCATTGAAATCTCTACTTCCTGATCCTTTTCCCAAGGCAACCAAAGTCAATGTTGAGGAGATGCCACCTATGCCCCCTCTACCACCAATGCAATGGAGAACAAACAAGGTTCAAAATGCTTCCATAGTTTCTCAGAGAGAAGAGATAGAAGTAAGTCAAGTGTCNTTCCAACCAATACAGCCAGTTAAACATGATCACAAGTCTCAATTTGGTTTGCCAACTTTTGAAAGAGAGACCTTCCNATATCAGAATCCATTTTTGCCNGTTGTGGCTGTGGAAAGTAATAAACACCTACACTCTTCTGGGTTATCAGAGGGTGTTTCACAGCATCCTGTTGCTATTCCTTTGCAATTTCCTGTCATGGTACATGAAGCAAATGGTCAGCATAATTACCTACTTCTGGAGAGAAGCCAAATTCATAACTCTTTCTTAACATTACCTCTGGTATCTTCGGGCAGGCCTCCACATGGATGTGTCATTGCTTCAGAGGGAGAAAGTGTATTGAATTCAAGTTCATGCCCACCAATACTGCCTGCTGAATGTGCTGTTTCTGGGGCTGATCCTGTCTTTGAACAAGAAAAACCAACTCATTCTCCAAGTCAATTAATGGAAGATGCTAGTTTAGAAGTTAAAAAGGANAGACCTGAAGAACTGCATTTGGTGCTACCTGCTGAATGTCCCGTATCTGGAGATGATCNCATTTCTCCAAAAGAAAAACCTTCTCAATCTCCAAATCAATTAATGGAAGAGGCTACTTTAGAAGTTCAAACACTTGAGCAATCTTCGATTAATTTGGAAAGGAAACAAGGAGATCCTTTAGTCTCACCCGAGTCACCACCAAGTATAGAAATTGTGCAGCTCAATCACAGCCTTCTGCCTTCAGAGGGGGAACNGGCATTATCATTGGATACACCTGCTCAAACATCAGAGTTTGATAGTGAAATGCCAAATGGAAAACCAAAGAATAAGCTTCCTCGNCCTCAGAACCCTTTAATTGATGCTGTTGAAGCTCTTGACAAAAGCAGGCTGAAGAAGGTCACTGATCGTGTTAGGCCCCAGATAGCACCTAAGGTAGATGAAAGAGACTCGTTGTTAGAACAGATAAGAACAAAGTCCTTCAACTTGAGGCCTGCTGGGGTTACACGACCCAGCGTTCAGGGTCCGAAAACGAACTTGAGGGTTGCTGCCATCTTGGAGAAAGCAAATGCAATTCGCCAGGCATTGGCTGGAAGTGATGAAGACGATGATGCAGACAGTTGGAGTGATTCTTGAATTTACTACAGAATGAAGAACACTGATCTCAGTGTCCGTTGATGTTTTTCTATTGTGGTTCTTGTCCTAAATCAGGTGTAAAAAGTCTTTCTTCTTCNCTGTAATGAATAGGAAATTTAGTCAATACACAAGATTCTTTATTATGCTGTGTTCATATCATATATGGTACTCTGGACAACATGTCCCCTCCCGAGTCCTCCCTATTCACGCACAGATGCATGAACATTGGAACAAGCATGCGGTGTTGTATCAATCAAGAGGATTTTTCANAGGTGAAACTCACTTCAGTCAGGCTCAGGCTCAGCGTGTAAGCGCTGTATCCATCCAAATCAACCAACCCATNAGCAAATCTTTTTCATTTTCATATAAGTACGTGTATATTTGTGTTGTGGTTGTCATAATTTTTTTATTTTATTTTATAGTCATGGGTACCCAGTTTTGTAATTCTGTAATATAGTGGTTTACTGATAATTGCCTGAAAAGTCAAAAACACCATGTCATCCATCTATTTGTGTCCCATACATAGTATANGTTTGCAGACACGTGAGTGAAATATTTTTATTGTACAGTTTCCATCATTGCCTTTGTTCACTGATATTCTTTTCAAC

Protein Sequence

>Glyur000190s00015734.1
MPISRYHIRSXHGLADPELYRAADXDDAEALLEGVAMAGLVGLLRQLGDLAQFAAEMFHDLHEEXMXTAERGHSLVSRVQQLEAEVPALEKVFLSQTHHSTFFANGGXTTQSFIWIDWHPNLRSEQNLVTRGDLPRFILDSYEECRGPPRLFLLDKFDVAGAGACLKRYSDPSFFKAESAPSVTATVXVHREKKIRKVRQKKGAWPRNSETPEVVSSHSKLHQLFLEERIENACSDPARTVKLRKRQLDRFAVEXKSGKSYMEKFLEMPSPDNKMVCESSIIPLPVKLMSDDTSETGIKILEISSISPVRSSLGNEKERSSPNEQELELNPCSEMDRETNGYLVKVHEQISAGVTDEMSSNHLKVPDETELGDDEQKKRECRLDGYRSDDGTSEVDDYMDALATIDSELDTDNECRPKKSLLNVQKVTDSNGEEGHRLQAQFSDSPSFGDSSISEETSSFEQDRNEEHNEVQAWLXDSQSTGIPCASDDNSSFRRDRNEEHTQLQAQFSDSKSIRNSSLEIENMPSNQVPQTVELPNIHGEFVTHDXTHDQGEVISDSKPVTYGSCLMDSGSLLLSSDLGATSLVSLPTGTQSDETPSVPVELHLRLEDDKDRKCLVESIAAVPCAFSPIKDDTXPLVSFDNNSLNNLDVCDPYVHSNALLQVSNDLNLAHEGECGDHSXIKVLQAESVNKYNSEISVVGDIGSRGEDDNKLLHYDQDLKSEDDIIATELNSEDLFPIVETTVQSSFTGDPCSDYIHGNPQDEPDLAEFDPDQQSNFDEVPRIIPSDEINGSTCSLDPVEDDGHIKHPPSPDYTRQDNHVMVNDMFSVKVQSEDQTVSALPSVDTAENDESIVNCLASDSISSPPRNLSNFHEPFLGFSDSHQMEMESNEVELTKVSVDLNAEKGENQLEPSSNIISSPMSSLTKLEESLSTFADPHEKKMEVNEAVARESLRELSAHKVVDQPEIAFTDAQLNLNRTVPCDPSDSGICTNIQYSSLEEKSQYGSSLNGMKMVTECSELDSQKAESIHVCQNDLQNSKGSLSPPSCNQDVGFLLRNEENCTPVXFQPQPMQISYQLEQEXISHAASEFSAEVHPDRPSRVSSSGQQINPTKHVMDPLKSLLPDPFPKATKVNVEEMPPMPPLPPMQWRTNKVQNASIVSQREEIEVSQVSFQPIQPVKHDHKSQFGLPTFERETFXYQNPFLPVVAVESNKHLHSSGLSEGVSQHPVAIPLQFPVMVHEANGQHNYLLLERSQIHNSFLTLPLVSSGRPPHGCVIASEGESVLNSSSCPPILPAECAVSGADPVFEQEKPTHSPSQLMEDASLEVKKXRPEELHLVLPAECPVSGDDXISPKEKPSQSPNQLMEEATLEVQTLEQSSINLERKQGDPLVSPESPPSIEIVQLNHSLLPSEGEXALSLDTPAQTSEFDSEMPNGKPKNKLPRPQNPLIDAVEALDKSRLKKVTDRVRPQIAPKVDERDSLLEQIRTKSFNLRPAGVTRPSVQGPKTNLRVAAILEKANAIRQALAGSDEDDDADSWSDS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00190	178359	185653	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030036 actin cytoskeleton organization

cellular_component
GO:0005856 cytoskeleton

molecular_function
GO:0003779 actin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.374
SRR1783600	control	17.551
SRR1783602	moderate drought stress	18.847
SRR1811619	moderate drought stress	18.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.262
DRR006520	Root Summer glycyrrhizin high producing strain	17.039
DRR006521	Root Winter glycyrrhizin high producing strain	5.535
DRR006522	Root Winter glycyrrhizin high producing strain	5.384
DRR006523	Root Summer glycyrrhizin low producing strain	26.171
DRR006524	Root Summer glycyrrhizin low producing strain	26.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.947
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.768

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.626
SRR2868004	Drought Stress (root)	15.552
SRR2967015	Control (root)	18.382

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.115
SRR9715740	Leaf	7.897
SRR9715741	Leaf	7.825
SRR9715739	Root	1.708
SRR9715742	Root	11.828
SRR9715743	Root	10.115

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.064
SRR8749028	MeJA induced 9h	4.501
SRR8749029	MeJA induced 9h	2.750
SRR8749030	Uninduced	1.466
SRR8749031	Uninduced	1.125
SRR8749032	Uninduced	1.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.539
SRR8400027	Control - Root	24.026