Gene detail information of Glyur000190s00015732 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51680.1 | 2.00E-102 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003534665.1 | 0 | PREDICTED: short-chain dehydrogenase reductase 2a-like [Glycine max] |
| COG | YP_004861824.1 | 1.00E-59 | short-chain alcohol dehydrogenase-like protein [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|Q9SCU0|SDR2A_ARATH | 2.00E-134 | Short-chain dehydrogenase reductase 2a |
| trEMBL | tr|K7LGJ5|K7LGJ5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G41620.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00190 | 156095 | 157299 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000190s00015732.1 | PF00106.20 | adh_short | 33 | 200 | 3.20E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.378 |
| SRR1783600 | control | 0.327 |
| SRR1783602 | moderate drought stress | 0.375 |
| SRR1811619 | moderate drought stress | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.112 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.123 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.677 |
| SRR2868004 | Drought Stress (root) | 26.903 |
| SRR2967015 | Control (root) | 24.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.096 |
| SRR9715740 | Leaf | 0.841 |
| SRR9715741 | Leaf | 8.404 |
| SRR9715739 | Root | 1.664 |
| SRR9715742 | Root | 0.775 |
| SRR9715743 | Root | 1.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.588 |
| SRR8749028 | MeJA induced 9h | 22.314 |
| SRR8749029 | MeJA induced 9h | 35.544 |
| SRR8749030 | Uninduced | 69.401 |
| SRR8749031 | Uninduced | 15.016 |
| SRR8749032 | Uninduced | 19.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.556 |
| SRR8400027 | Control - Root | 2.278 |