Gene detail

Gene detail information of Glyur000190s00015728

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08840.2	0	D-alanine--D-alanine ligase family
NR	XP_003623519.1	0	D-alanine--D-alanine ligase [Medicago truncatula]
COG	YP_007397.1	1.00E-133	D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila UWE25]
trEMBL	tr\|G7KW01\|G7KW01_MEDTR	0	D-alanine-D-alanine ligase {ECO:0000313\|EMBL:AES79737.1}

Sequence

Transcript Sequence

>Glyur000190s00015728.1
TATAAAGCATCGTTTGAGCTCAGGAAGCNTGGATTCATAACAGTGCCCAGTTTCTTAGTTCAGGGATGTGAAACAAACATATCAGAACTATCAGAGTGGTTTGAGAAACAGCAGCTGGACCCTGACTTGGGGAAAGTTGTGGTAAAACCAACAATTGGAGGGTCAAGCATTGGTGTTAGAGTTGCATATGGTGTGACTGATTCTCTTGTAAAAGCCANTGAAATTATGTCTGAGGGAATTGATGATAAAGTGCTCATAGAAATATTTCTTGAAGGAGGGAGTGAGTTTACAGCCATCGTCCTTGATGTNGGATCTGGTTCAGATCGTTTTCCTGTTGTACTACTTCCTACTGAGGTGGAGCTTCAATTCCTTGGTGCAAATGATGTTAAAGAGAATGATGCAATATTTAATTACCGTAGGAAGTACCTTCCAACCCAACAGGTTGCTTATCACACTCCACCTCGATTTCCTTTGGATGTAATTGAGAATATTCGCAAAGGAGCATCTCTGTTATTTCAACGGCTTTGCCTGCAAGATTTTGCACGAATTGATGGATGGTTTTTGCCTGATTCAGGTTGTAAGTTATCATCTTCAGCAAGTGAGTTTGGAAGAACTGAATCTGGAACCATAATGTTCACTGACATTAACCTGATCAGTGGAATGGAACAAACTAGTTTTCTATTTCAGCAAGCTTCTAAGGTTGGTTTTTCTCATAAAAATATTCTCAAGAGTATTGTTCACCATGCTTGCTTGCGGTTTCCAAATCTTGCATCAGTTAGTGGTATATCAGATCGGATTCCAAGCAGATCAAAATCTTTAGAATTTAACACGTCATTTCCTCACTCTGAAGGAGTTCGAAAAGTTTTTGTCATTTTTGGAGGTGACACATCNGAACGGCAAGTATCTCTTATGAGTGGTACAAATGTCTGGCTCAATTTGCTAGCCTTCCATGATCTCGAGGTAACTCCATGTTTACTTTCCTCAAGAAGTGATTATGCATCTAATGTCGATATGGGAATGAAGGCTGATGATGTAAGGAATAGAACAATTTGGTCATTACCATATTCTCTTGTGCTACGACATACTACTGAGGAGGTACTTGATGCATGTATAGAAGCAATTGAGCCTGATCGGGCTGCACTAACATCTGACCTACGGAAGAAAGTAATGAATGATCTCATGGAAGGTTTGAAGAATCACAATTGGTTTACAGGATTCAATATTGCTGACGAACTGCCTAAGAAATTTTCTCTGAGGCAGTGGATCAAGTTAGCCAAGGAAGTCCAGGCAACAGTTTTTATTGCTGTACATGGAGGCATTGGAGAAGATGGTACACTTCAATCTTTGTTGGACGCTGAAGGAGTTCCCTACACAGGTCCTGGTGCATTGGCATCAAAGATTTGTATGGACAAAGTTGCAACTTCTGTTGCTTTAAAGCATCTTGCAAATTCGGGAGTTCTTACCATAAATAAGGAAGTCTTGCGAAAAGATGATCTGTTTAATAAGCCCATAAATGATATATGGCATGACCTCACCCAGAAGCTACAATGTGAAACATTATGTGTCAAGCCAGCAAAAGATGGATGCTCAACTGGGGTTGCAAGATTATGCTGTTCCAATGACCTTGCGATATATATCAAAGCTCTGGAGGACTGTCTACTAAGGATTCCTCCAAATAGCTTATCAAAGGCACATGGTATGATTGAGATGCCATACCCTCCTCCAGAACTCGTGATCCTTGAACCTTTCATAGAGACAGATGAAATAATTGTGGCAGCCAAGTCTAAGAATGAGACTGGTCATGGCCTCATGTGGAAAGGGAACAGTAGGTGGGTGGAAATAACAGTTGGTGTCATTGGAAAACGTGGATCAATGCACTCNCTAAGTCCTAGTTTGTTCACAATGGCTCATTTCTATCCTTTACCTGTACATTGCTTCACAGGTGGGACTGGCATCAATCTGACTCCACCTCCCTTGTCAATTATGAGTGAGAAAGCTTTGCAGAGATGTAAACAGTATATTGAACTGATTGCAAACACTCTACAATTAGAAGGATTTTCACGCATTGATGCATTTGTCAATGTAGACAGTGGAGAGGTTTTGATTATAGAGGTAAATACTGTGCCTGGAATGACACCTTCGACTGTTCTGATTCATCAGGCACTAGCAGAACAACCACCATTGTATCCTCATCAATTCTTCCGTACNCTTCTTGATTTGGCATCTGAAAGATCCATTTAAATGTGTTTAAAAGAATGTTTGCACTGTTTTCATCATTTGATGTTTATTACCGGAAGTTATTGTGTAGCAGCATATGACATTCATATTCATATGTGGAAGTTGCTACCCTTGATAGTGTGAAACTCCAATTTCATTCTTGTTTCCCTCTCATGTATGTTTTCAAGTGCAATCAAGTCCAAGTCCGATCTCACTNTGTGGAGTCAGCTCCATGGATACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00190	111991	135129	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0005524 ATP binding

GO:0008716 D-alanine-D-alanine ligase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000190s00015728.1	PF07478.8	Dala_Dala_lig_C	45	246	2.30E-12
Glyur000190s00015728.1	PF01820.16	Dala_Dala_lig_N	287	460	5.90E-15
Glyur000190s00015728.1	PF07478.8	Dala_Dala_lig_C	612	715	1.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.921
SRR1783600	control	16.082
SRR1783602	moderate drought stress	18.610
SRR1811619	moderate drought stress	18.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.175
DRR006520	Root Summer glycyrrhizin high producing strain	18.056
DRR006521	Root Winter glycyrrhizin high producing strain	42.126
DRR006522	Root Winter glycyrrhizin high producing strain	41.077
DRR006523	Root Summer glycyrrhizin low producing strain	12.263
DRR006524	Root Summer glycyrrhizin low producing strain	12.467
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.425
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.536

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.961
SRR2868004	Drought Stress (root)	63.993
SRR2967015	Control (root)	38.667

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.700
SRR9715740	Leaf	12.695
SRR9715741	Leaf	15.030
SRR9715739	Root	3.376
SRR9715742	Root	10.348
SRR9715743	Root	10.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.463
SRR8749028	MeJA induced 9h	7.602
SRR8749029	MeJA induced 9h	4.057
SRR8749030	Uninduced	3.142
SRR8749031	Uninduced	0.585
SRR8749032	Uninduced	2.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.033
SRR8400027	Control - Root	32.783