Gene detail information of Glyur000190s00015727


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G56190.12.00E-51alpha-soluble NSF attachment protein 2
NRXP_003623523.18.29E-112Alpha-soluble NSF attachment protein [Medicago truncatula]
Swissprottr|P93798|SNAA_VITVI6.00E-69Alpha-soluble NSF attachment protein
trEMBLtr|G7KW05|G7KW05_MEDTR3.00E-112Alpha-soluble NSF attachment protein {ECO:0000313|EMBL:AES79741.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0019097791100406+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006886  intracellular protein transport


molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000190s00015727.1PF14938.1SNAP72134.80E-59
Glyur000190s00015727.2PF14938.1SNAP72282.90E-67


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.276
SRR1783600control10.743
SRR1783602moderate drought stress12.888
SRR1811619moderate drought stress13.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.176
DRR006520Root Summer glycyrrhizin high producing strain22.138
DRR006521Root Winter glycyrrhizin high producing strain17.101
DRR006522Root Winter glycyrrhizin high producing strain17.236
DRR006523Root Summer glycyrrhizin low producing strain14.539
DRR006524Root Summer glycyrrhizin low producing strain14.241
DRR006525Leaf Summer glycyrrhizin high producing strain6.163
DRR006526Leaf Summer glycyrrhizin high producing strain5.964

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)9.816
SRR2868004Drought Stress (root)12.554
SRR2967015Control (root)11.873

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf6.476
SRR9715740Leaf8.978
SRR9715741Leaf7.420
SRR9715739Root2.890
SRR9715742Root8.845
SRR9715743Root5.864

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.634
SRR8749028MeJA induced 9h6.144
SRR8749029MeJA induced 9h4.091
SRR8749030Uninduced2.463
SRR8749031Uninduced1.845
SRR8749032Uninduced2.990

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root27.395
SRR8400027Control - Root27.215

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved