Gene detail information of Glyur000190s00015726 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56190.1 | 2.00E-04 | alpha-soluble NSF attachment protein 2 |
| NR | XP_003623523.1 | 2.25E-22 | Alpha-soluble NSF attachment protein [Medicago truncatula] |
| Swissprot | tr|Q9M5P8|SNAA_SOLTU | 7.00E-14 | Alpha-soluble NSF attachment protein |
| trEMBL | tr|G7KW05|G7KW05_MEDTR | 8.00E-23 | Alpha-soluble NSF attachment protein {ECO:0000313|EMBL:AES79741.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00190 | 95488 | 96274 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000190s00015726.1 | PF14938.1 | SNAP | 7 | 50 | 2.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.959 |
| SRR1783600 | control | 12.178 |
| SRR1783602 | moderate drought stress | 10.020 |
| SRR1811619 | moderate drought stress | 12.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.311 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.620 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.579 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.462 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.634 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.142 |
| SRR2868004 | Drought Stress (root) | 2.909 |
| SRR2967015 | Control (root) | 2.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.734 |
| SRR9715740 | Leaf | 0.966 |
| SRR9715741 | Leaf | 0.559 |
| SRR9715739 | Root | 0.316 |
| SRR9715742 | Root | 0.823 |
| SRR9715743 | Root | 0.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.263 |
| SRR8749028 | MeJA induced 9h | 2.202 |
| SRR8749029 | MeJA induced 9h | 1.015 |
| SRR8749030 | Uninduced | 0.182 |
| SRR8749031 | Uninduced | 0.774 |
| SRR8749032 | Uninduced | 0.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.690 |
| SRR8400027 | Control - Root | 2.630 |