Gene detail information of Glyur000190s00015721 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11740.1 | 2.00E-31 | Protein of unknown function (DUF567) |
| NR | XP_003588870.1 | 5.67E-90 | hypothetical protein MTR_1g014180 [Medicago truncatula] |
| Swissprot | tr|Q9SF24|LOR10_ARATH | 1.00E-37 | Protein LURP-one-related 10 |
| trEMBL | tr|G7I889|G7I889_MEDTR | 2.00E-90 | Tubby C 2 protein {ECO:0000313|EMBL:AES59121.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00190 | 68110 | 72832 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000190s00015721.1 | PF04525.7 | Tub_2 | 70 | 227 | 2.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.457 |
| SRR1783600 | control | 0.149 |
| SRR1783602 | moderate drought stress | 0.340 |
| SRR1811619 | moderate drought stress | 0.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.386 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.984 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.635 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.521 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.231 |
| SRR2868004 | Drought Stress (root) | 30.835 |
| SRR2967015 | Control (root) | 25.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 155.087 |
| SRR9715740 | Leaf | 40.881 |
| SRR9715741 | Leaf | 141.739 |
| SRR9715739 | Root | 15.801 |
| SRR9715742 | Root | 23.033 |
| SRR9715743 | Root | 17.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.817 |
| SRR8749028 | MeJA induced 9h | 35.538 |
| SRR8749029 | MeJA induced 9h | 15.238 |
| SRR8749030 | Uninduced | 122.849 |
| SRR8749031 | Uninduced | 83.757 |
| SRR8749032 | Uninduced | 26.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.290 |
| SRR8400027 | Control - Root | 12.952 |