Gene detail

Gene detail information of Glyur000190s00015714

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08860.1	2.00E-119	PYRIMIDINE 4
NR	XP_003623559.1	6.61E-179	Alanine glyoxylate aminotransferase-like protein [Medicago truncatula]
COG	YP_001817512.1	5.00E-95	class III aminotransferase [Opitutus terrae PB90-1]
Swissprot	tr\|Q9SR86\|AGT23_ARATH	2.00E-159	Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBL	tr\|G7KX17\|G7KX17_MEDTR	2.00E-179	Alanine-glyoxylate aminotransferase-like protein {ECO:0000313\|EMBL:AES79777.1}

Sequence

Transcript Sequence

>Glyur000190s00015714.1
CTCACACTCACAATAAATAATATAATAATATATATAAAAAATGCTGTATCGCGTTGAGGCTATCTGAATATGTGATTTCGAATAAGAGAAAAACACGTGGTGAGTCCCACTTCACTTGTATATCNCTTTACGGATTATAGTAACCCGTGCAAAATTGCTTGCACAACTCAATTAATCAATTATTTAGAGAACAAACCAGGGTCTTAAGTTTCACGTAGAACGAAATTGAGCTATAGCTAATGGACTGGAGTAAAAGTAACACTCATCTAGGTAGCTGACGCATACTTTCACTTAACTTTGGAGTATGTACTAAGTGCGTGATAGCAAATAGCAACACCAGCGGAGTTTGGCGCACCCCTTTGCTGGACGCATTCCTATTCCTATCAACTATGATATTGAAAGCGAACCCCTCATTATCGGTAGCATTTAAAAGGGNCTTTTTTTTCCTATAAAAATTAAGTAGGTTCAGATAAGTGCTAAAGTGCTGTGACGATGATTTCTGGTGACAATGAAAGCGTGGACCCCACCCCTTTAAGCAAATAATATTAGTAGATTATTACAATTACGTGGTGTCCTTATTCATTCTCAATCAGGAGTAGAAGAATTCATCAAAAAAAGGGGAGTAGAAGATACACATCTCTTGGCCCAAATATAATTTGCTTTGTTGCCGTGTGAATCCACATGNAAATGCAATGCCCTAGTGGTGTTCACCATGCAGTAAATCCAGACCCTTACAGGGGTCTTTTTGGCTCCGANGGAGAGAAGTATGCAAGAGATGTCCAAGAGATCATCAACTTCGGAACTTCTGGAAAAGTTGCTGCCTTCATATCTGAAGCTATACAGGGCGTGGGGGGCATTGTTGAATTGGCACCTGGTTACTTACCCGCTGCCTACGATAGTGTTAAAAATGCTGGAGGTCTTTGTATTGCCGACGAGGTTCAATCTGGGTTTGCTCGCATTGGTAGCCATTTCTGGGGATTTGAATCCCATGGTGTTCAACCTGACATTGTAACAATGGCAAAGGGTATTGGAAATGGCATTCCTCTTGGTGCTGTTGTAACTACTCCTGAGATTGCGANGGTCTTGACTCAGCGAAGTTACTTTAACACCTTTGGTGGGAATCCTGTTTGTACCGCTGCAGGATTGGCCGTTTTAAGAGTGATAGAGAAGGAAAAGCTTCAAGAAAATGCGTTTGTAGTGGGGTCCCATTTGAAAGAGAGGCTCAATGCACTCAAGGACAAATATGAATTAATTGGTGATGTGAGAGGAAGAGGCATGATGCTTGGAGTTGAACTTGTCACTGATCGTGAGCTTAAAACACCAGCAAAAGATGAAACACTGCATGTCATGGACCAATTGAAAGAATTAGGAGTGCTGGTTGGAAAGGGTGGCTATTATGGAAACGTATTCAGAATTACTCCGCCCCTATGTTTCACCAAAGAAGATGCAGACTTCCTGGTGGATGCGATGGACTACACATTGTCTAGGATGTGAACCTTAAATAAGATCCAAGTGTAAATAAANGTCCACCTTATTTTATCATGTTAAGAAAAGACTGTACTAGATCATCCATCTATCTAGACTCCAGCAAGTAAAATTTNTAAATTTTACATGCAAACTTAGACCTATAGTGGCCACCANTGTCTGTCATCGTAGAAAACGAATGAGCCAACAACTCGTTGTCTCCGTTATCTTATCTCATCCTATAATTTTGTCGGCTGCTCCTTTATTNTTGGGTCCATGCCAATCCTGATATCTGCTTCTTTTTCCTTTTGGTCATATCATTTCTCTGGTTTTATGTTATTGTCAGCTCTACTATATATATCGAATCATCGAATGCTGATAATAAATTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00190	3666	7686	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00827	AGXT2	EC:2.6.1.44 2.6.1.40	Alanine, aspartate and glutamate metabolism	map00250
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000190s00015714.1	PF00202.16	Aminotran_3	12	206	3.00E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.500
SRR1783600	control	11.704
SRR1783602	moderate drought stress	26.308
SRR1811619	moderate drought stress	26.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.666
DRR006520	Root Summer glycyrrhizin high producing strain	15.140
DRR006521	Root Winter glycyrrhizin high producing strain	123.969
DRR006522	Root Winter glycyrrhizin high producing strain	122.003
DRR006523	Root Summer glycyrrhizin low producing strain	17.001
DRR006524	Root Summer glycyrrhizin low producing strain	17.561
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.743

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.644
SRR2868004	Drought Stress (root)	44.674
SRR2967015	Control (root)	38.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.132
SRR9715740	Leaf	9.850
SRR9715741	Leaf	15.149
SRR9715739	Root	7.953
SRR9715742	Root	25.269
SRR9715743	Root	22.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.778
SRR8749028	MeJA induced 9h	95.428
SRR8749029	MeJA induced 9h	53.022
SRR8749030	Uninduced	65.160
SRR8749031	Uninduced	45.914
SRR8749032	Uninduced	105.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.184
SRR8400027	Control - Root	14.618