Gene detail

Gene detail information of Glyur000189s00009630.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G21060.2	Galactosyltransferase family protein
NR	XP_003524877.1	PREDICTED: probable beta-1,3-galactosyltransferase 20-like [Glycine max]
Swissprot	tr\|A7XDQ9\|B3GTK_ARATH	Probable beta-1,3-galactosyltransferase 20
trEMBL	tr\|I1K3I3\|I1K3I3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G27610.1}

Sequence

Transcript Sequence

>Glyur000189s00009630.1
CCCCTTATCTTCGTTTTCAAGTGTGATCATTACAGTGTTCATTTCCAGGCTCACAGCCTTTCATTCACGTACGGTTGTGCATTAGGGTTCACGGTGGAGATCGAGTGCTGTCTAAAGCTTGAAGCTTTAAGGCNTCTCCGGGATCCAATTGAAATGGGGTTCTTCCCAATTTGTTGATGCCTTGCCAATTTTTGAAACTCGATCTCTTCCTTCTTCTCACTGAGGTTTGATTCTTCATATTCTTATGAAAGTGCCCACTTCCATTGCCTAATGCATAACCGTGTTTNTTTTTGCTGAAACGTTGGAAGGGGGTTTGCTTTCAAAACATGGTCTTGTAAGGATAGTGTTTGGGATAGAGGGATTTGTTGTTGTTGTCTTTGTAGAGTGTGTTGTAGTTTCTGTTGTATTGTCTTTTGAAGATGAGGAGAACGAAAAGTGAACCTATCAATTCGAGGAGGTTTAGGTTGTCTCATTTTTTGTTCGGCATTGGGGTGTTGTACTTGCTTTTTATATCATGTAAGTTTCCACAGTTTCTAAGAATTGTATCAACATTAAGTGGGAATGAGAGTGGTGATGATAGATTGGATGGGGCAGCTGCTGGGGTCTCTGAAGATTCTGATCTAAGCAAGTCTTTTGTGAGTTCCGTTTATAAAGACGCCTTTCACCGGAGACTAGAGGATAATAGGGACCAAGGTGCACCCCTGAGGCCAAACAAGGAGCCAATGAAGGAGGAAGAACATGGTCCAGAACCCGTGAAGCAGATTCTGCCGCGGTATGGTAGGATCACNGGGAAAATCATGCAGGAACAGAAGAGGACCAGTGATTTGTCTGTTCTTGAGAGGATGGCAGATGAGGCATGGATGTTGGGGGTAAAGGCTTGGAAAGAAGTAGATAGTATTAATGNCATGGAATCGGGAGAAAGCTCTGTCCTTGAAGGAAAGCTTGAGTCTTGTCCTTCGTGGATATCAATGAGTGGGGAAGAGTTAGTTAAAGGAGATAGTTTGATGTTTCTCCCCTGTGGGCTNGCAGCCGGTTCTTCAATCACTCTCGTGGGGACACCCCATTATGCTCATAAGGAGTACGTCCCCCAGCTTGCCAGGTTGAAGAGAGATGGGGGATTGGTTTCAGTTTCACAATTCATGGTTGAATTGCAAGGGCTAAAGTCAGTGGATGGGGAAGATCCTCCAAAGATCCTTCACTTGAATCCTCGAATAAGAGGGGATTGGAGCAAACGTCCAGTAATTGAGCATAATACCTGTTACCGAATGCACTGGGGAACCTCTCAGAGATGTGATGGTCTGCCATCTGGGGATGAAGAAGAAATGCTTGTTGACGGATACAGACGATGTGAGAAATGGATGCGGAATGACATTGTAGACTCAAAAGAGTCCAAGACAACGTCATGGTTTAAACGGTTTATAGGGCGTGAGCAGAAGCCAGAAATGACCTGGCCATTTCCTTTTATAGAGGGTAGAATGTTTGTCCTTACACTGCGTGCTGGTGTTGATGGATACCATATTAATGTTGGGGGTCGCCATGTAACTTCATTTCCATATCGNACTGGATTTACACTTGAGGATGCTACAGGATTAGCAGTTAAAGGGGATGTGGATGTTCATTCAATTTATGCTACNTCTCTTCCTACTTCCCATCCAAGTTTCTCACCTCAAAGAGTACTGGAAATGTCAGAGANCTGGAAAGCTGGACCTTTACCCAAACACCCTATTAAACTTTTTATTGGAGTTCTTTCAGCTTCAAATCACTTTGCAGAACGAATGGCGGTTAGAAAAACATGGATGCAATCAGCTGAAATCAAGTCTTCAGATGTAGTAGTACGATTCTTTGTTGCACTGAATCCAAGGAAGGAAGTAAATGCAATGTTGAAGAAGGAGGCTGCTTACTTTGGTGACATCGTCATTCTGCCCTTTATGGATCGCTATGAGCTTGTCGTCCTTAAAACTGTGGCCATTTGTGAGTTTGGGATTCAGAATGTGACCGCTGCATATATTATGAAATGTGATGATGATACATTTAGTAGGGTGGATACTGTCTTGAAGGAAATTGAGAAGGTACCCCCCAAAAAGTCTCTTTATATGGGCAATCTCAATCTCTTGCATCGGCCTCTGAGAAATGGCAAATGGGCAGTCTCTTATGAGGAGTGGCCAGAAGCAGTGTATCCTCCTTATGCAAATGGGCCTGCATATGTAATTTCCAGTGACATTGTTACTTTCATCCTATCTCAACACAAGGATAGGAGACTAAGGCTCTTTAAGATGGAGGATGTAAGCATGGGAATGTGGGTCGAGCGATATAACAATACCGTAGCCGCGGTCCAGTACTCTCACAACTGGAAGTTTTGTCAGTATGGATGCATGGAGGGGTACTTCACTGCACATTACCAATCACCAAGGCAGATGATCTGTCTATGGGACAAATTGTCAAGAGGTCGAGCTCGTTGCTGCAACTTCAGATGACTTTTGCATCAACAACTTTGCCGCTTTGATTTGCCACTGTAGTCTCTTGTATTCTTATACCCCTTGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	259542	264198	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0008378 galactosyltransferase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009630.1	PF00337.17	Gal-bind_lectin	195	404	9.40E-50
Glyur000189s00009630.1	PF01762.16	Galactosyl_T	451	631	1.70E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.848
SRR1783600	control	11.967
SRR1783602	moderate drought stress	15.409
SRR1811619	moderate drought stress	15.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.733
DRR006520	Root Summer glycyrrhizin high producing strain	17.598
DRR006521	Root Winter glycyrrhizin high producing strain	12.137
DRR006522	Root Winter glycyrrhizin high producing strain	11.836
DRR006523	Root Summer glycyrrhizin low producing strain	19.810
DRR006524	Root Summer glycyrrhizin low producing strain	19.473
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.862
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.821

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.163
SRR2868004	Drought Stress (root)	26.211
SRR2967015	Control (root)	29.659

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.834
SRR9715740	Leaf	18.414
SRR9715741	Leaf	16.416
SRR9715739	Root	10.735
SRR9715742	Root	19.082
SRR9715743	Root	18.848

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.212
SRR8749028	MeJA induced 9h	25.349
SRR8749029	MeJA induced 9h	20.022
SRR8749030	Uninduced	11.610
SRR8749031	Uninduced	11.501
SRR8749032	Uninduced	13.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.774
SRR8400027	Control - Root	23.952