Gene detail

Gene detail information of Glyur000189s00009629

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30370.1	1.00E-149	alpha/beta-Hydrolases superfamily protein
NR	XP_003532708.1	0	PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Glycine max]
COG	NP_847303.1	4.00E-11	lipase [Bacillus anthracis str. Ames]
Swissprot	tr\|Q941F1\|PLA15_ARATH	4.00E-128	Phospholipase A1-Igamma1, chloroplastic (Precursor)
trEMBL	tr\|K7L5U6\|K7L5U6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G10600.2}

Sequence

Transcript Sequence

>Glyur000189s00009629.1
ATGGTGGCACTTTGCAATAACCACCACCTTCTGGTCCCTCACCGAACCGGCACGAACCGGTTCAACATGGTCCTAGCCCAACAACAACATGAGGGTACTCTAATAGATCACCCAAAAACCAAGACCCCCAACAGGGCTACCCGTTTGGCCGAGTCCCTCTCACACGCCCTTCACCTTCACATTGACCCACCTTCACGCACCACTCACCAAAACTTCAATNACTTGGACTTGCTAAGAGACCACGAAGAGAAGCACTCAACTCCAACCNTGTCCCCAAAAGAAAACATATCCAAAAATTGGAGTGAAATCCATGGATGTTCCGATTGGGAGACCCTTCTAGACCCTCTTCACCCATGGTTGCGTAGGGAAATTGTCAAGTATGGAGAATTTGCACAAGCAACCTACGATGCCTTTGACTATGATTCTTTCTCGGAGTACTGTGGCAGTTGCCGTTACAACCGAAACAAGCTATTTGAGAAATTGGGCCTCACTAGAAATGGTTACACCGTGACTAGCTACATATATGCCATGTCACACATAGAGCTGCCACGTTGGCTAGAGAGGTCACACGTGGCCGACACGTGGAGCAAGGATTCCAATTGGATGGGGTTCGTGGCTGTGAGCGACGACGAGGAGACACGTAGGTTCGGGAGGAGGGACATCGTGGTGGCGTGGCGCGGCACCGTGGCGCCGTGTGAGTGGTACGAGGATTTTCAGAGGAAGTTGGACCCAATTGGGCCGGATGATGATGCGGATAAGCCCAAAGTGGAACGTGGGTTTCTTAGCATCTACCGTTCCAAGAGTGACACCACNAGGTACAACAAGTCAAGCGCCTCGGAGCAAGTCACGAAGGAAGTGACAAAATTGGTGAAATTTTACAAAGAAAAAATGGGCGAGGAAGTTAGCCTCACAATCACGGGGCATAGCCTAGGAGGTGCTTTGGCATTGCTCAATGCCTATGAAGCAGCATCTACCATTAAGGGCATTCCAATAAGTGTGATTTCTTTTGGGGCACCAAGGGTTGGAAACATTGCCTTCAAAGATGAATTGCAACAAATGGGGGTGAACACGCTACGCGTTGTGGTGAAACAAGATTGGGTTCCCAAAATGCCGGGGCTTGTGTTCAATGAGTGCTTGAAAATGTTTGATGAGCTTACGGGGTTGGAATGGGTTTACACGCACGTTGGGAATGAGCTTAGGCTTGATGTCCATTCATCTCCTTATCTTAAAGCTGGTGGGATGAACTTGCTTGGCTTTCATAGCTTGGAGACATACCTTCACCTCATAGATGGGTACTTGAACTCGGACACACCGTATAGGTTGGAAGCTAGAAGGGATGTTGCACTGGTTAATAAGTCGTGTGATATGGTGGTTGATGAGCTTAGGATCCCACATTGTTGGTACCAATTGGCCAACAAAGGGTTGGTTTGTAATGCTCATGGGAGATGGGTTAAACCCAGAAGAGATCCCGATGATATACCTTCACATGCTAGCGAAGTTATATGTAACCACGAGCTTGTTGCGGGTGAAATGCAAACATATGGGATGAGTTTGGTCTCCCCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	256039	257604	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009629.1	PF01764.20	Lipase_3	222	373	1.70E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.066
SRR1783602	moderate drought stress	0.024
SRR1811619	moderate drought stress	0.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.002
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.246
SRR2868004	Drought Stress (root)	5.088
SRR2967015	Control (root)	7.277

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.731
SRR9715740	Leaf	0.520
SRR9715741	Leaf	1.898
SRR9715739	Root	1.019
SRR9715742	Root	0.667
SRR9715743	Root	0.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.962
SRR8749028	MeJA induced 9h	1.438
SRR8749029	MeJA induced 9h	2.757
SRR8749030	Uninduced	31.370
SRR8749031	Uninduced	14.003
SRR8749032	Uninduced	3.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.563
SRR8400027	Control - Root	0.604