Gene detail information of Glyur000189s00009628 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12230.1 | 2.00E-04 | |
| NR | KHN46043.1 | 4.41E-44 | hypothetical protein glysoja_030044 [Glycine soja] |
| Swissprot | tr|Q6NQD9|MD19B_ARATH | 2.00E-32 | Probable mediator of RNA polymerase II transcription subunit 19b |
| trEMBL | tr|K7KQ88|K7KQ88_SOYBN | 2.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G27631.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00189 | 252647 | 255260 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.077 |
| SRR1783600 | control | 8.202 |
| SRR1783602 | moderate drought stress | 9.052 |
| SRR1811619 | moderate drought stress | 9.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.378 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.568 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.115 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.590 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.107 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.181 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.382 |
| SRR2868004 | Drought Stress (root) | 7.318 |
| SRR2967015 | Control (root) | 8.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.115 |
| SRR9715740 | Leaf | 3.669 |
| SRR9715741 | Leaf | 3.295 |
| SRR9715739 | Root | 0.740 |
| SRR9715742 | Root | 1.684 |
| SRR9715743 | Root | 1.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.370 |
| SRR8749028 | MeJA induced 9h | 7.014 |
| SRR8749029 | MeJA induced 9h | 14.019 |
| SRR8749030 | Uninduced | 8.303 |
| SRR8749031 | Uninduced | 10.878 |
| SRR8749032 | Uninduced | 7.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.466 |
| SRR8400027 | Control - Root | 10.742 |