Gene detail information of Glyur000189s00009627 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24440.1 | 6.00E-86 | RING/U-box superfamily protein |
| NR | KEH20535.1 | 3.58E-152 | RING finger protein [Medicago truncatula] |
| trEMBL | tr|A0A072U3W9|A0A072U3W9_MEDTR | 1.00E-152 | RING finger protein {ECO:0000313|EMBL:KEH20535.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00189 | 247090 | 249442 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.064 |
| SRR1783600 | control | 3.202 |
| SRR1783602 | moderate drought stress | 4.074 |
| SRR1811619 | moderate drought stress | 3.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.375 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.302 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.492 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.220 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.090 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.643 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.238 |
| SRR2868004 | Drought Stress (root) | 42.189 |
| SRR2967015 | Control (root) | 30.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.837 |
| SRR9715740 | Leaf | 14.766 |
| SRR9715741 | Leaf | 14.008 |
| SRR9715739 | Root | 2.271 |
| SRR9715742 | Root | 6.023 |
| SRR9715743 | Root | 4.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.377 |
| SRR8749028 | MeJA induced 9h | 19.951 |
| SRR8749029 | MeJA induced 9h | 23.183 |
| SRR8749030 | Uninduced | 7.991 |
| SRR8749031 | Uninduced | 27.256 |
| SRR8749032 | Uninduced | 14.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.522 |
| SRR8400027 | Control - Root | 16.844 |