Gene detail

Gene detail information of Glyur000189s00009624.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67710.1	9.00E-94	response regulator 11
NR	XP_003524159.1	0	PREDICTED: two-component response regulator ARR11-like isoform X1 [Glycine max]
COG	NP_683154.1	6.00E-16	two-component response regulator [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|Q9FXD6\|ARR11_ARATH	3.00E-117	Two-component response regulator ARR11
trEMBL	tr\|I1K3I8\|I1K3I8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G27670.1}

Sequence

Transcript Sequence

>Glyur000189s00009624.2
TCTCATCTCACTTTTCTTCTTCTTCAATCTGAACATGCTAAAGCTAATCCAACCCAATGAATGTCTATCCTCTAATACCCACAACCTTTGCTCATTAAAGTTGCCAACTTTTCCTCAAATTTCATCTCATTCTCATCGTGTATTAATTTGTCTTTTTCTCCATCTTAGACTCAAAACAACATCACTGTTCCCACTTCCTAGTATACCCAAAGGGGACATATACTAACGTGCGCCACTAGGACCGTTAATATTCGTTAGTGCTCTCTCTCTCTCTCACTCACACCTTAAAACCCAAACAAAGCAAGCCCCATTTTTTTGTCTTGAACTCAAAAGACAGTGAGTGATACAACATAGGTCTCNTCTCTTTCTATCTGACAAGTGAAAACATGGATAGTGGTTGCTTCCCTTCTCCACGCCTTGATGCTTTTCCAGTTGGTCTGCGAGTTCTCGTTGTTGATGATGATCTAACATGGCTGAGGATCCTTGAAAAAATGCTCAAAAAGTGCTGCTACGAAGTGACTACATGTTGTTTAGCAGCAGAGGCTCTTNGAAAGCTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGNTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCAGTCATCAGTCAGTCCTTCTAATGATGATTTTCATTCATCTTTTTCTTCAAATGATGTCCTTGTAATATTTGAATCACACTTGATAATGCTGTGCAGTGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTGCTTAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAACATGTTCTTAGAAAGAGAATACATGAGGCAAGAGAATTTGAAAGTCATGAGGGTTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATTACTCTGATGATGGTAACCTCTTTGCTATAGAAGAAATTACCTCAGGGAAGAAAAGGAAAGATGTAGATAATAAACATGATGGCATAGAATTTGGAGATCAAACTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTCAATCACTTTGGATTGGATAAAGTTGCTCCCAAGAAAATTCTAGATTTGATGAATGTTCCCAGGCTAACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACNGGCTCTACTTGAGTAGGTTGCAAAAGGAAGATGATCACAAATCTTCAGGTGGAACAAAGCATTCGGATTTACCTTCGAAANATCTGGGAAGTTCAAGTTTTATCAACTCTCCGAACAAGCAACAAAATGATGTTGCAATTGACAGCTTCAGATATTCAGATGGAACATTAAAACTTCATATGGATGCTACAAGCCATGAAGATGATCTCAAGGGAATTGTGTCAGAGCCAACAACAGAAAATAGAAGAGCTTCGACTAGTGACATTCCTGACCCAAAGATACGAAAGAGTTCACAGATGGGCCTTAATCAACCTTTTGCATCTGTAAAGTCAGAAGCAAACCATGCAGTATTTGATTGCACCATACCAACACAGTGCTCTTGGAGTGAAGTTCCAANAAGGCCACTTGAAAAAGAACAGAAGACACTTGTTCAATTAAAAGATAGCTTCANCCAGTTGCCATTAAATGGTACACAGCATCACTTCCAGGTTGATCAATCACAATCAGTTGCTCCAGTTAGCTCAAATCCCTCTGTAACACAAGAGGTTGCTGATTACAAGAGTGATTACATCAGTCCTGTGAATTCAAGAGGGTCTGCAGTTGACAACTTTCCTATTCAGTCCAAAAGCCTCATGGTGAATGATCAATCTCCAGATCTTGTTTTCACTTCAAATTTGGGCTTGAAAACACATGGATTTGATCTCGGTTGCATTTCTGATCCGGAGTTTTACCAAAGAAACCTGCTTTTGGGTGGTGAGGTAGCTTCTGCACCTTTGGAGGAGGACTTTCGTTTCTTTTTGCTACAAGGTGATTGCTATAATGTGGACTTCGGTCTGCAGAATATAGAGATGTCACAGTATTATGATCCAAGACTTATTGCTGAAGTTCCTACCCAATTATTTGATTCAGCAGATTATTCAGCAGTAGATCAAAGTCTATTCATAGCATGATCTGTCTTGCCCTTTCCTGTACCTTCAACAAAAATCCAACACCACACGTGAAAGGACAATTTACTAGTTACCAAACTTTCTTCCTTTCAAGAATTCCAACTTTGAGGGGTTGGGGGTATTCTTTTTCCAATCAGCTAGGATTTGATATTGAATATCAACTGAATATTATGCACATAAACTTATATGTTGCTANCAAAAAAATATATATAAACTTATATTTGCACTTCTAACTGTAAGCATATTGTGATAGAAATCTCACAAATAGGAAGGGGACAGCAGTTAAAAAACAAGCCTTTGTCTTAACACCTCATNCTTCAAATTCACTATGCTTGGTTGGACACTTGCATGAAGTTAATTGCCAATGTTTACGGGTAAGTGGCAAATACATTGGTCTCTTCTGGCCGACCTCTTATATCTTCACTTTGGTAACGTTAAGGCTTAAGCGCATGGAGCAAAGAAGATAATTATCATCCTTACTATTGATTTCTTAATAACATTCCTTTCTTAGCCTTTCAGCTGAAATAGTGTATTCAGGGCCACAACTCACTAATACTACTAGTAATGACAAATTTTATAAGTAATGGTATAGTATTTCTTTAATTAATAACTAAGACCCCTAATTTTATTAAGTTCTTACATGGTATTATTTATTACANTAGCATGCCCAACGGTTTGGATTAAGGGAGGCATATTGAAGGAGCTCCACATCACGCTCAAACATAGCCATGTCATGCTCATCCATGTTCACAATTGCTTCAATCCCATCCCCATCTCTGGTATCCATCAACACTATGCCATTCCTCACAGGGCAGAAACTAGTGGTTACCCATATGGGCTTTCCCCACCCAAAATCTGCTTCATACGCTGGGAACCTGCACCAACTAGCATAAATAAACAGTGTCTGATTACATTCCTCTGTATCAGAAGAACCACAAGGCTCCGGAACTGAGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCTTGTTTTATGCACTCAGAGATAAACGACAAGTCCTTCTCCTTCCCTCCAAATTTCTTCGCCAACACGTTATTAAACTCTGACAACCCTTCTCTCATTTTGCTCACCAAGTCATGTTGTTCCGTTACAACCGGGTTGGTCACGAACAAGAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	225648	229687	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARR-B
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009624.2	PF00249.26	Myb_DNA-binding	107	156	5.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.505
SRR1783600	control	5.624
SRR1783602	moderate drought stress	1.865
SRR1811619	moderate drought stress	1.853

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.721
DRR006520	Root Summer glycyrrhizin high producing strain	3.726
DRR006521	Root Winter glycyrrhizin high producing strain	3.275
DRR006522	Root Winter glycyrrhizin high producing strain	3.282
DRR006523	Root Summer glycyrrhizin low producing strain	2.304
DRR006524	Root Summer glycyrrhizin low producing strain	2.296
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.395

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.305
SRR2868004	Drought Stress (root)	16.670
SRR2967015	Control (root)	14.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.137
SRR9715740	Leaf	4.208
SRR9715741	Leaf	1.296
SRR9715739	Root	0.181
SRR9715742	Root	2.078
SRR9715743	Root	2.274

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.879
SRR8749028	MeJA induced 9h	1.516
SRR8749029	MeJA induced 9h	1.073
SRR8749030	Uninduced	0.508
SRR8749031	Uninduced	0.392
SRR8749032	Uninduced	0.661

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.298
SRR8400027	Control - Root	2.437