Gene detail

Gene detail information of Glyur000189s00009618

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18840.1	4.00E-166	Major facilitator superfamily protein
NR	XP_003594043.1	0	Sugar transporter ERD6-like protein [Medicago truncatula]
COG	YP_008071424.1	9.00E-60	D-xylose-proton symporter [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1]
Swissprot	tr\|Q8LBI9\|EDL16_ARATH	0	Sugar transporter ERD6-like 16
trEMBL	tr\|G7IFL9\|G7IFL9_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:AES64294.1}

Sequence

Transcript Sequence

>Glyur000189s00009618.1
ATGGCAATTGAGCAGCACAAGGATGTTGAGAATGGAGAAGCCAGTGGGCTTCAGTACTTGCAAGAGCCTTTCATTCAACAAAGGGAGGCTGCTTCTGATGCATGCGAAGAAGTTAGATCAGATAATAAAAGTGTGGAAAATGGATCCATTGGAATGGTTCTGCTCAGCACATTTGTTGCAGTTTGTGGCTCTTTTTCATTTGGAACTTGTGTGGGCTATTCAGCACCCACTCAAGCAGCTATAAGGGCAGATCTTAACCTATCTATTGCTGAGTTTTCCATGTTTGGTTCTTTGGTGACCATTGGTGCAATGCTTGGGGCTATAACAAGCGGCCGAGTTACTGATTTCATTGGCAGGAAAGGGGCTATGAGAATTTCAACAGGATTCTGCATTATAGGATGGTTAGCTGTCTTCTTCTCTATGAGTTCTTACTCACTTGACTTGGGAAGATTTTTCACAGGATATGGAATTGGAGTTATCTCATACGTGGTTCCGGTGTATATAGCAGAAATAGCACCCAAAAATCTTCGAGGAGGACTTGCAACCACAAATCAGCTTATGATTGTTATTGGATCATCAATGTCATTCTTAATAGGAAGTGTCATCAATTGGAGAGAACTGGCACTAGCAGGACTAGTGCCTTGCATTTGCTTGCTGGTTGGTTTGTGCTTCATACCTGAGTCTCCCAGATGGCTGGCAAAAGTTGGCCGCGAAAAAGAATTTCAACTAGCTTTAAGGAGACTTCGGGGTAAAGATTTTGATATTTCTCATGAAGCTACTGAAATTCTGGATTATATTGAAACTCTTCAAAGCCTTCCTAAGACTAAACTGTTGGATTTGTTCCAGAGCAAATATGTTCGCTCTGTAGTTATTGGGGTTGGATTAATGGTATGCCAACAATCTGTTGGAATTAATGGTATAGGATTCTATACAGCTGAGACTTTTGTAGCAGCTGGACTTTCTTCAGGAAAAGCTGGCACCATAGCCTATGCTTGTATGCAGGTTCCATTTACCATGTTGGGAGCCATTTTGATGGACAAGTCTGGAAGAAAACCTCTTGTAACGATCTACGTAGCAGCATTTTCAATTGGGTTGGGACCAGTTCCTTGGGTGATAATGTCTGAGGTGTTTCCCATACATTTGAAGGGAACTGCTGGAAGCTTGGTGGTTTTGGTGGCCTGGTTAGGAGCATGGGTAATTTCATATACTTTCAACTTTCTCATGAGCTGGAGTTCCCCTGGTACTTTGTTTTTGTATGCTGGATGTTCCCTCATAACCATTCTATTTGTAGCAAAAGTAGTCCCAGAAACCAAAGGTAAAACATTGGAAGAAATCCAAGCTTGCATTAGTAGTTCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	190367	193957	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009618.1	PF00083.19	Sugar_tr	58	355	6.00E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.020
SRR1783600	control	0.004
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.034

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.502
SRR2868004	Drought Stress (root)	69.760
SRR2967015	Control (root)	56.003

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.046
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.166
SRR9715739	Root	0.000
SRR9715742	Root	0.007
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.537
SRR8749028	MeJA induced 9h	1.329
SRR8749029	MeJA induced 9h	0.294
SRR8749030	Uninduced	3.654
SRR8749031	Uninduced	22.441
SRR8749032	Uninduced	11.603

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.916
SRR8400027	Control - Root	3.810