Gene detail

Gene detail information of Glyur000189s00009617.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18830.2	2.00E-176	squamosa promoter binding protein-like 7
NR	AES64286.2	0	squamosa promoter-binding-like protein [Medicago truncatula]
Swissprot	tr\|Q8S9G8\|SPL7_ARATH	0	Squamosa promoter-binding-like protein 7
trEMBL	tr\|G7IFL1\|G7IFL1_MEDTR	0	Squamosa promoter-binding-like protein {ECO:0000313\|EMBL:AES64286.2}

Sequence

Transcript Sequence

>Glyur000189s00009617.1
AGAAAGTGCAACGTGAATTGCATTTGCATTTTTTGCATAGGAAACAACTACGCGTGAGATGAGAAGGTGGAGAGATGGCGCGTGGTTGAGTTTGAGGGGCCAAAAAAACTTGAAAATGTCGCCACGATGACACCAACCGAACCGAATTACCCACAAAAAAACACACCCANCCCACCAGCCGCCGTATCGTAGCTTCTCCGCCAAAAAAAAAAAACNCAACGACTCTTCAACCACCGCGCTTCTCCCTCCTCNTCCTCCAAAATAGCGTTCCCATAATCTCGATGGAATCCCAATCCCAATTCCAATCGAACCTTCCAGAGATGGACGCACCCGAAGACCCTTCCTCCGTTTGGGACCTCACTTACCTCCTTGACTTCAATCTCGACGGCGACACTCCTTTCCCCTTAAACCATCCACAACAACAACAATTCCCCCCTCTCCCCGACCCATTCCCACCCGACCCTAACCCTAACAACCATGACGTCGACGACGAGGTGGATATTCCACCGAGCGATAGCAGGGTCCGAAAGCGTGACCCGAGGCTCGCTTGCTCCAACTTTCTCGCGGGTCGGATCCCATGTGCCTGCCCCGAAATGGACGCGATGCTCGAAGACGACGGTTTACCCGGTAAGAAACGGGTTCGGACCGCACGTGCTTCTTCATCCGCACGCTGCCAGGTTCCTGGCTGTGAGGTTGATATCTCCGAGCTCAAGGGCTATCACCGTAGGCATAGGGTTTGTTTGAGCTGTGCTAATGCTTCCACCGTTCAACTTCACGGCGAGGCCAAGCGATACTGTCAACAGTGCGGAAAGTTTCACGTTTTATCGGATTTTGACGAAGGGAAACGAAGCTGTAGAAGAAAATTGGAGCGCCATAACACCAGGAGGCGGAGAAAGCCTGCATCAGCATCAGCAGCAGATCATGAAGTTCAACCTGTTACTCAAAATGAGGATTTCAATTTTGACGGTGAAGCAGGAAGAGATTGTTCGAATTTGAGTAGTGAGATGACTGAAAAACGAGGGTCCCCGGATCATGAAGAGGAGCAGGTTGCTACTATTCGGTCCTCAACTCCTGATACCCAGAATATTAATGGTGATAGTGTTGTGTCTTTTATTGCTGAAACACAAGTGAATAGTGGGAGAGATGTTACCAATATTTCTAAGTCGCCTTCATATTGTGACAATAAGAGTGCTTATTCGCCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTACGATTGGAATCCCGCGGAATTTCCTAGAAGGCTACGGCACCAAATATTCCAATGGTTGGCAAGTATGCCTTTGGAGCTGGAGGGATATATCCGCCCTGGCTGTACAATCCTGACAGTTTTTATTGCAATGCCAAATATCATGTGGATAAATATATTGAAAGACCCTCTGTACTATGTGCATGATCTTGTTGCTCCTAGGAAGATGCTATCTGGAAGAGGCACCGCACTAATTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAAGTTCTGTGACAAAAGTCGAGGTAAACATGAGGGCACCAAGGCTTCACTATGTTCATCCCACATGCTTTGAAGCAGGCAAACCTATGGAATTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTATGGAAAGTATCTGAAGTATGAGTATTGTGTTTCATCTCCACATAACTGGACCGAAGACAATATTTCTTGTGCTTTTGACAATCAGTTATACACGATACGTGTCCCTCACACAGATGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGCACTGAAATGAAGACATTGCAGAAAAAATTAGATATCTCTCTCCTTTCTGAACAATTCCAGTCTGCATCTGGTGTTTCTATCTGCAGCTCATGTAAAGCTTTTGCACATATTCAGACATCTTCATCAGACTTACTTGTAGATATAGCNTGGTTGCTTAAGGACCCTACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGTTATTTGTTGGATTTTCTAATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATTTTGACAGAAAGCATGAAATCCAATATGAGTGATGTTGACATGACGCAGCTACTAAAATGCATGCATAATGCTAGAGATGCTATTTATCGGAAACATCAGAAAGGTGGAGGTATAGTTTTGCACTCCCAAATGGAAGGCTTTAGACCTGGTCAGAGCCGTTCCCAAGATAAATTGTTATCAGTTGCTGAAGTTAACAGTCAGGGTATCCTGTTGAGAGCAGATGCAAAGTTGGGAGTTCTGAGAAGTCCCGCTTCTGATGACAAAAATGATAAGATACCACTTTTGAAGAGGGAGATTATAATGAATGTGGAAGACCTGCCTAAAAGATGTGAACGTCGATACCTTTCCAGGGGATTCTTGAGCTCTCGGCCAGCTATTTTTGTGCTTGTTTCAGTTGCTGTTTGTCTCGCGGTATGTGTATCCATCCTTCATCATGGGAGGGTTAGTGAGTTAGCAGTATCCATTAGAAGGTGTTTGTTCAACCATTAATACATTTTCCAAATTTTTTGTACTTATTTTCTAGTTGGTACATATTTGTTGTAACACTAAATAAACAGATGCTATTAGGATGAGTAGGTAGTTTATTACATTGGAAGCTTAATCCAAGGTTGCTGATTTGTGGATTACCAATTTAATTGGATGTCCTCAGAGGGACCAGCAGGTGCTATTCGTGACTGCAACGAGTACACGATTATTAGGGGTAGAAGGCAGAATTAGGCCTAGCTCAACCTTAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	181560	187432	+

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009617.1	PF03110.9	SBP	130	206	1.10E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.743
SRR1783600	control	16.711
SRR1783602	moderate drought stress	17.913
SRR1811619	moderate drought stress	18.020

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.841
DRR006520	Root Summer glycyrrhizin high producing strain	17.445
DRR006521	Root Winter glycyrrhizin high producing strain	10.933
DRR006522	Root Winter glycyrrhizin high producing strain	10.620
DRR006523	Root Summer glycyrrhizin low producing strain	15.677
DRR006524	Root Summer glycyrrhizin low producing strain	15.667
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.285
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.243

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.161
SRR2868004	Drought Stress (root)	33.319
SRR2967015	Control (root)	28.751

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.140
SRR9715740	Leaf	23.889
SRR9715741	Leaf	36.516
SRR9715739	Root	7.548
SRR9715742	Root	36.537
SRR9715743	Root	30.757

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.304
SRR8749028	MeJA induced 9h	10.997
SRR8749029	MeJA induced 9h	3.787
SRR8749030	Uninduced	11.733
SRR8749031	Uninduced	7.912
SRR8749032	Uninduced	4.619

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.843
SRR8400027	Control - Root	26.204