Gene detail

Gene detail information of Glyur000189s00009605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08820.2	3.00E-36	vamp/synaptobrevin-associated protein 27-2
NR	NP_001240997.1	6.34E-122	uncharacterized protein LOC100816526 [Glycine max]
Swissprot	tr\|Q9SHC8\|VAP12_ARATH	4.00E-42	Vesicle-associated protein 1-2, N-terminally processed
trEMBL	tr\|C6T8H2\|C6T8H2_SOYBN	2.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G10510.1}

Sequence

Transcript Sequence

>Glyur000189s00009605.1
GGGGAGGCGAGGAGTTGGGGCGCGGAGCCAGTAACAGAGAGAGGTAGCTGGGTGGGTGTCGGCATGGAATGTGAAGTACAAGCAATGTGTCGCACTCTTCACGTAACCGACGCCACCAACACTCCCCCATCATTCTTCTTCTTTCTCTAACTCCCCTTCTTAGTTTCCACTTCTCAGTTCTCTCTCTTTCTCTCTCTCTCTCACACACACACACATACAATCTCTCTGGGTAGTGAGTTGAAGTTGTAAAGGCACAACACAACACAACACAACAGAAGGCTCGCTCGCTCATTCATTGTGATGGCTACGGATATGGAGCTTCTCCAAATTGAACCCCCTCAACTCACATTCATCTTTGAATTGAAGAAACCCAGTTCCTGCTTGCTTCATCTCGCCAACAACGCCCCTCACTCCATCGCCTTCAAGGTAAAAACGACGTCGCCCAATAAATACTGCGTCAGGCCAACCATCGGCATCATCAAACCACACGCAACACGTGATTTCACCGTTACAATGCAAGCNCAGCGCACCGCCCCGCCTGATTTGCACTGCAAAGACAAATTCCTCATTCAAAGCACTGTTGTGCCCTTGGATGCAACCCAAGATGGCATCTCTTCTCACCTGTTTGCAAAAGACAGTGGCAGGCATGTTGAGGAGAAGAAACTGAGGGTAGTGTTGCTTCCGGTTAATGCAGATTATTTGAAGCAGCAGGATCATCCACCCAACCCAATCCCAACTGGAGCTGAAAACATGCCTCTCCCTCTTACCGTTTCTGAGGAAAGAAGTTTGGAAACAACACCTCGTGATATGGTGGAGGATAGAACTGATGAGGATATTATTGTTTCAAGACGTGTTGAGAATGTGGGTGACATGAAGCAGCAACCAAATGATGCTGCGTTGTTGAGTTTGGCTAAGGATTCCGAGGAATTGAAGTCAAGGCTGTGTNCAATGGATTCAAAGCTAAGAGAGGCTGAAAGAACCATCGTGAAGCTGAATGAAGAGAGGCGCAACAACACCCGAGAAAAAGATTTGCTCAAGCAAGAGTTGGAGGTGTTGAAGAGGAAAATCAACATGAAAAGAGCCAAGGAGGGCTTTCCGTCACTGTTTGTTTGCGTGGTTGCGCTTGTCAGTGTGGCAGTCGGATATTATATTCACCCATAAAGGTGGGGGANATAATATGTATAGTAGCAGATTTCTAATGTCACAACGTTCTCCTTATTGATTTGATAGAGGAGGATAATTCATTGTTNATTGTACTCTGCAAATGTTAATATGTGACGTGTGGTATGGTATGGGAGTGTCTTTCTGAAATGTATGTAAAAAATCAAGGAAGGAAGGAATTCTTCTAAAACACAATTTTAACTTTACATATATTGAACAACAACTAGCCAACCATTAATACACATCAATACACAAGCACCAACCATTAATAGCCTCCTTGGTTGCATACTTACATGTGAATTCAAGTGATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	115382	118694	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009605.1	PF00635.21	Motile_Sperm	8	110	1.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.599
SRR1783600	control	6.468
SRR1783602	moderate drought stress	4.131
SRR1811619	moderate drought stress	3.952

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.036
DRR006520	Root Summer glycyrrhizin high producing strain	6.643
DRR006521	Root Winter glycyrrhizin high producing strain	0.733
DRR006522	Root Winter glycyrrhizin high producing strain	0.863
DRR006523	Root Summer glycyrrhizin low producing strain	4.381
DRR006524	Root Summer glycyrrhizin low producing strain	4.145
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.768
SRR2868004	Drought Stress (root)	3.353
SRR2967015	Control (root)	5.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.353
SRR9715740	Leaf	0.319
SRR9715741	Leaf	0.330
SRR9715739	Root	1.488
SRR9715742	Root	5.602
SRR9715743	Root	4.269

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.168
SRR8749028	MeJA induced 9h	0.091
SRR8749029	MeJA induced 9h	0.201
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.523
SRR8400027	Control - Root	13.418