Gene detail information of Glyur000189s00009594 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15620.1 | 5.00E-19 | Uncharacterised protein family (UPF0497) |
| NR | XP_003546096.2 | 4.48E-59 | PREDICTED: CASP-like protein 6-like [Glycine max] |
| Swissprot | tr|C6TBD0|CSPL6_SOYBN | 4.00E-61 | CASP-like protein 1E1 |
| trEMBL | tr|I1MF62|I1MF62_SOYBN | 2.00E-59 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00189 | 56778 | 61218 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000189s00009594.1 | PF04535.7 | DUF588 | 38 | 90 | 5.90E-05 |
| Glyur000189s00009594.1 | PF04535.7 | DUF588 | 115 | 259 | 1.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.121 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.054 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.721 |
| SRR2868004 | Drought Stress (root) | 0.295 |
| SRR2967015 | Control (root) | 0.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.887 |
| SRR9715740 | Leaf | 2.103 |
| SRR9715741 | Leaf | 5.250 |
| SRR9715739 | Root | 0.070 |
| SRR9715742 | Root | 0.068 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.154 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.254 |
| SRR8749031 | Uninduced | 0.071 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.258 |
| SRR8400027 | Control - Root | 0.305 |