Gene detail

Gene detail information of Glyur000189s00009590

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18630.2	4.00E-107	alpha/beta-Hydrolases superfamily protein
NR	XP_004486050.1	0	PREDICTED: lipase-like isoform X1 [Cicer arietinum]
COG	YP_002773477.1	2.00E-21	hypothetical protein BBR47_39960 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|A2ZW16\|PLA1_ORYSJ	2.00E-12	Phospholipase A1-II 1
trEMBL	tr\|B7FJ77\|B7FJ77_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK45104.1}

Sequence

Transcript Sequence

>Glyur000189s00009590.1
GTTGGAATACAGTCAAAAAAACAAAAGGATAAGAGTTGGGATACGCCACGAAAATGACGAAATCAACCCCAGCGACGTCGTAATACGCTAGTTCTTTCTTTCTTTTGTTGTTGTTGTTGTTCTTCTTCATCATCTTGTCCTGTACAACCCCAAATTATTTTTTTGGTGGGAATATAACCCCAAATTATTATTGCTATGACTCTTTGACTNCTCCTTTCTCTCTTTTCGCCGGAAACACCTTTGCGGCGGAGGACACAGATTCCCATTCCCCGGTGCTCCTTTTACACATATTATAGTATGGGGAAAACTGGGTGCTTGATATTGGTTACCTGTTTATGCCTTTTTGCCTTCTCAGATGGTAGAGAACTCAAGGCTAGGCATACAAGTAATCTTCCCAAGTACAATCATACACTTGCTACAATATTAGTGGAATATGCTTCTGCGGTATACTTGTCAGATTTGACTCAACTCTTCACTTGGACGTGCTCAAGATGTGATGACCTGACCAAGGCATTCGTTGGAGTGGCCGAGGATCCTCATGCTATTATCATTGCTTTCAGAGGAACTAATGAGCACAGTTTACAGAACTGGATCGAAGATTTATATTGGAAGCAGCATGAAATAAATTATCCAGGCATGGATGATGCAATGGTACATCGTGGTTTTTATACTGCATACCACAATACAACAATTCGTCCTGCAATTTTAGGGGCTGTTGAAAGAGCGAAGAAGTTTTATGGAGATATTCAAATTATAGTAACAGGGCATTCAATGGGAGGGGCAATGGCTGCGTTTTGTGGACTTGATTTAACGGTAAATCAACATGAAAATAATGTTCAGGTTATGACATTTGGACAACCTCGTATTGGGAATGCTGTTTTTGCATCTCTCTACAGCGAACTAGTTCCAAATACAATTCGNGTCACACATGACCATGATATTGTTCCCCATTTGCCTCCATACTATTACTATTTACCACAGAAGACATACCGCCACTTCCCGAGAGAGGTATGGCTTTATAACATTGGGTTAGGTAGTCTNGTATACTGGGTTGAGAAGATTTGTGATGGATCCGGTGAGGATCCATCTTGCAGCAGGTCAGTGAGTGGGAATAGCATCACAGACCATTTAGTCTATTATGGTATTGACATGGGATCAGATGAACCAGAATCATGCAGAATTGTTATGGATACTCATGTTCTGAATACTAATAGTAATAATAGCACCAGGGATTCAAGAGGAAACTTGATCTTATCTAGAGATCCTGCAACTCCCCTTCTCAAATTGAAAAGAGAGATTGACAATCAGGAAAAGCCCATTAATGCCTATTGAATTGGCATGAGATATCTCTTGCTGCAAGATAATTGAGGGGGCGTTATACTTCTAATTTCTTCTTTCTTCACGGGTCCTTCGTCCATAGAGCAGAAGAATTTTATTGGAATTAGCTATGGGTGNAAGGAGTTTGTGTATAGTCTTCTTGTATATGCTCATCCTTGTATATATGATCAATCAATAATTCTTGGTACTGTTGATAAGTGTACAACTTCACTTTCAAATACTACTGAATTCCACCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	41979	46397	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009590.1	PF01764.20	Lipase_3	84	223	4.10E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.399
SRR1783600	control	8.299
SRR1783602	moderate drought stress	11.400
SRR1811619	moderate drought stress	11.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.752
DRR006520	Root Summer glycyrrhizin high producing strain	15.538
DRR006521	Root Winter glycyrrhizin high producing strain	29.073
DRR006522	Root Winter glycyrrhizin high producing strain	28.260
DRR006523	Root Summer glycyrrhizin low producing strain	23.778
DRR006524	Root Summer glycyrrhizin low producing strain	23.385
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.765

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.068
SRR2868004	Drought Stress (root)	46.662
SRR2967015	Control (root)	43.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.200
SRR9715740	Leaf	19.832
SRR9715741	Leaf	19.334
SRR9715739	Root	6.771
SRR9715742	Root	7.627
SRR9715743	Root	8.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.930
SRR8749028	MeJA induced 9h	57.594
SRR8749029	MeJA induced 9h	39.459
SRR8749030	Uninduced	59.130
SRR8749031	Uninduced	125.572
SRR8749032	Uninduced	104.732

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.575
SRR8400027	Control - Root	22.365