Gene detail

Gene detail information of Glyur000188s00019486.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02460.1	5.00E-35	Dof-type zinc finger DNA-binding family protein
NR	XP_004515618.1	5.57E-121	PREDICTED: dof zinc finger protein DOF5.1-like [Cicer arietinum]
Swissprot	tr\|O80928\|DOF24_ARATH	5.00E-49	Dof zinc finger protein DOF2.4
trEMBL	tr\|A0A072TZB1\|A0A072TZB1_MEDTR	8.00E-105	Dof domain zinc finger protein {ECO:0000313\|EMBL:KEH22839.1}

Sequence

Transcript Sequence

>Glyur000188s00019486.1
GCTCCTCATCACCACCTTCCCCTCTCTTCTTTCTTCTTTCTTGCTTTCTCTTTTCCTTTCTCTCTTCCTATGTTCAGCAAGCACAACTACACACACACACACTCTCTCTCTCTCTCTCTAACTTGTTGATGTGATTCTCTCCACTATTCCCTCCCTAAAAACCCATCAACCTTTACAAAAGAGAAAGCTCCAAGAGGAATAACCATGGTTTATACTTCCCTTCCATCATATATGGATCCAGCCAACTGGCACCAACAGCAACCAAATCATCAAGTGGCCAACACCGGTGGTGCAAGCTCTTCTNTTCTTATTCCACAGCCTCTGCCATNGAACCCNGCTCCAACGCANCCTTCTCATGGGGGAGGCTCNATCAGGCCGGGTTCGATGGCAGATAGGGCCAGGATGGCCAACATACCCATGCAAGAGCAGCCACAGAAGTGTCCAAGGTGTGATTCNACCAACACAAAGTTNTGCTACTTCAACAACTACAGCCTCACCCANCCCCGTCACTTCTGCAAGGGTTGCAGAAGGTACTGGACTAGGGGCGGCACGCNACGAAACGTCCCCGTCGGCGGGGGCTGCAGAAGAAACAAGAGGACTAAAGGAGGAAGCAGCAGTGGAGGGGCCGCCAAATCGCCAGCAGGCTCAACTGGCCCTGCAAATAGCGGCTCCTCTACTGATGTGGCAGGCCTCGGCCCCACCATGCCGCCGCCCATGAGATTCATGGCTCCATTGCATCAACTTGGAGAGATAGGGTCAAGCTATGGTTTGATTTCTGGTTCAATGGGAGGAGGAGGAGGGTTAATAGGGGACTTGAATTTCAACATGGGAAGCGCTTTGGGTGTAGCAAGTGGNGGTGGTTCTATTTTACCTCTTGGTGGTGGTTTGGAGCAATGGAGGGTCCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCTTCTTCTCCTAATNCACATGGTGGGTTGTTGTACCCATTTGAAGGTAGTGGTAATGATCAAACACAAGGATATGGTGGTGGTACAAGTGTGGCTAAGGTATCAGCTTCTTCAGTGAAAATGGAAGAGAATCATCATCATAATCATGAACTTGGTTTGTTTAGACACTTGGGAATCAACAACAATAACAACAATAATCCTACTAGTTATCAGCAGCAATATTGGGGTACTGCTGGTGGTGGTGCCACTTCATCTTGGACAGATCTTTCTGCTTTTGGCTCTTCTTCAGCTACTACTAGTAATCCACTATAAGAACTAATTATCACCCTAATTATTTATGAATATCTATATATCTATGCTCTCTTTTGTGAAGTTTCTGGTTTTTGGTTTCAAAGACTAAGTTTCAAGTTCAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00188	104710	106267	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000188s00019486.1	PF02701.10	zf-Dof	73	133	4.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.671
SRR1783600	control	4.893
SRR1783602	moderate drought stress	6.715
SRR1811619	moderate drought stress	6.296

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.333
DRR006520	Root Summer glycyrrhizin high producing strain	3.477
DRR006521	Root Winter glycyrrhizin high producing strain	0.245
DRR006522	Root Winter glycyrrhizin high producing strain	0.239
DRR006523	Root Summer glycyrrhizin low producing strain	3.805
DRR006524	Root Summer glycyrrhizin low producing strain	4.017
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.789
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.791

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.021
SRR2868004	Drought Stress (root)	10.522
SRR2967015	Control (root)	12.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.472
SRR9715740	Leaf	15.135
SRR9715741	Leaf	13.054
SRR9715739	Root	3.801
SRR9715742	Root	10.261
SRR9715743	Root	8.534

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.052
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.788
SRR8400027	Control - Root	9.558