Gene detail

Gene detail information of Glyur000188s00019484

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46510.1	6.00E-157	plant U-box 13
NR	XP_004515619.1	0	PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum]
COG	YP_001957542.1	3.00E-12	hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9SNC6\|PUB13_ARATH	0	U-box domain-containing protein 13
trEMBL	tr\|A0A072UAJ6\|A0A072UAJ6_MEDTR	0	Armadillo/beta-catenin repeat protein {ECO:0000313\|EMBL:KEH22840.1}

Sequence

Transcript Sequence

>Glyur000188s00019484.1
CAAGTCGCAACGCAACACAGCACAACACAACTAGAGAGAGAGAGAGAGAGAGAGAGTCACGCGACGCGGATGGTGAAAGTGAATGGCGGAAAGCAAGGGTGTCCTTCGGGTTCTCCGCAACCTCATCCACATTGCCTCCCAAATCTCACTCCTCTCCTCCTCCTCCTTCAACTTCAAGCCCCTCATCCACACCCATTGCTCGCTTCTCACNCACAGGATCACCTTCCTCACCCCTCTCTTCCATGAACTACTCCTACTCCTCCACCACCACAACGACGTCGTCTCGTTCCCCTTCGACGCTCTTGCTTCCCTCCAACAAGCCCTCCTCACCGCCAAGGAACTCCTCCACTTTGGTGCCCATGGAAGCCAGCTCTACATGATACTGGAGAGAGAGCAAATTCAATGCAAATTCAATGATCTTGCTTCTCATTTTGAACAAGCTATAAGCAACCTCTCCTGTCACACACTTGATATTTCTGATGAAGTTGCACTTGTGACTGCTCAGTTTAGAAGGGCCAAAGAGCGTTTTGAGCCACCTGGTCTTGAGCTTTATGACCACCTGTTGTGTATATATAACAACCAGAGCTGTGATGGGAATGCTGAACTGCGTTTAATCTGTGAAAAGCTACATTTTGTGAATGTGGAAGACATCAAACAAGAGTCACTCGCTCTGCATAGGATGACTGTAGAAGACAGGGTTGGTTGTTGTTTCGAGAAAAACATGCAGGGGATGTCAATAGTGCTGAAAAAAATTGAAGACTTCGTGTTGAAGAAGGAATGTGCAAACAGTGTTGCTTTGTCAAGTGAGGATTTCCCTCCTCATACTGATGAGCCGTGCGTGAAACTATGTTCTCAGTCACCGGTTATGCCAGAAGAGTTTCGCTGCCCAATATCTCTGGAGCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTNGATGCAGGGCATGGAACATGTCCCAAGACTCGGCAGATTCTTTCCAGCCCCATCCTTATACCTAACCATGTTTTATACAGCCTGATATCAAATTGGTGTGAGGCAAATGGTTTGGAACCACCTAAAAGGTTAGGAATTTTACGGCTCTGTAAGGCAACAACAGATGGCTTATCTGAATTAATAGATCTTGATACCCTAATGAGCAAACTTACTTCCAGTGACATTGAGGATCGGCGGTGCGCAGCAGGACAGCTCCGTCTACTTGCCAAACACAATCGTCAAAATCGAATGCTGATTGCTGAAGCTGGTGCTATACCACTCCTTGTGGATCTCCTCTATGTACCTGATGTTGGCACTCAAGAGCATGCAGTTACTGCTATTCTGAACCTGTCCATCTATGAGGATAATAAAGAGTGCATCATGGCTTCTGAGGCTGTGCCAGGAATCCTTCATGTGCTCAAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGCAGTGGACGAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCAAGGAACTAGTTAATCTTCTTTGNGAAGGAAGTCAAAGAGGGAAGGTGGATGCTGCGGCAGCACTATTCAATCTGTGTTTATATCAAGGGAACAAAGGGCGAGCAATCAGGGCTGGTATCATGCCCAAGTTGATAGAAATCCTGACAGAACCCGGCGGGGAGATGATGGACAAGGCATTGGCGATCATGGCTGTGGTAGTTAGCCACCCTGATGGAAAAGCAGCAATTGGATCCATGAATGCTGTGCCCACTTTGGTGGAATTAATCATTAATGGATCTGCTAGGAACAAAGAGAATGCAACTTCTGTGCTGGTGCACCTCTGNAGTGGAGATCCACTACATCTGTCAATTTTGAGTTCACNTGGGGTGATCAATCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGGCAAGCGAAAAGCTTCTCAGCTTCTCGAGTTGATTGGCATTTAGAGACCATTGTGAATATACTTGGCAACTGTAAGCTAGGTTTTAGGTGCTACTGTTGCCTCTGTAAGTTGCAGCTGCTGGCATAGATAGTAAAGTTTATGATTTACAATAGATTACTAGTACAGGGTCAGAAATATTTCCTTTTTAATTTTTTAGTTGAAAAAGGAAATTCCGATTTCAGTCAACCAATTATTATTTTTTGAATGGAATCACTTGTGTTGGAAAGCTGGTAAGAAGTGTTAAGGCAGATAGCTGTTTGACAATAGTTGAAGACTTGAAGTACATACAGACATTTTTTCTAAGGAAGAAATTTGTANACTTTTCCTTCTCAAACTCACACTGGCATACCTTTTTTTGCAATGAAATGTCCCTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00188	75574	83293	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000188s00019484.1	PF04564.10	U-box	263	332	5.20E-19
Glyur000188s00019484.1	PF00514.18	Arm	388	427	3.00E-10
Glyur000188s00019484.1	PF00514.18	Arm	471	509	1.10E-05
Glyur000188s00019484.1	PF00514.18	Arm	553	590	0.00021

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.495
SRR1783600	control	4.589
SRR1783602	moderate drought stress	5.613
SRR1811619	moderate drought stress	5.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.348
DRR006520	Root Summer glycyrrhizin high producing strain	3.272
DRR006521	Root Winter glycyrrhizin high producing strain	11.752
DRR006522	Root Winter glycyrrhizin high producing strain	11.207
DRR006523	Root Summer glycyrrhizin low producing strain	4.930
DRR006524	Root Summer glycyrrhizin low producing strain	4.950
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.798
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.865

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.731
SRR2868004	Drought Stress (root)	6.840
SRR2967015	Control (root)	8.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.114
SRR9715740	Leaf	5.902
SRR9715741	Leaf	3.487
SRR9715739	Root	0.989
SRR9715742	Root	2.594
SRR9715743	Root	1.974

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.244
SRR8749028	MeJA induced 9h	9.118
SRR8749029	MeJA induced 9h	6.733
SRR8749030	Uninduced	3.874
SRR8749031	Uninduced	2.549
SRR8749032	Uninduced	2.626

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.767
SRR8400027	Control - Root	6.863