Gene detail information of Glyur000188s00019479.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03220.1 | 1.00E-62 | Mediator complex, subunit Med7 |
| NR | NP_001241256.1 | 1.36E-93 | uncharacterized protein LOC100792250 [Glycine max] |
| Swissprot | tr|Q9LZD7|MED7B_ARATH | 7.00E-86 | Mediator of RNA polymerase II transcription subunit 7b |
| trEMBL | tr|C6TKC3|C6TKC3_SOYBN | 5.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G22810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00188 | 39891 | 46042 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MED7 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000188s00019479.2 | PF05983.6 | Med7 | 3 | 158 | 6.40E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.733 |
| SRR1783600 | control | 9.892 |
| SRR1783602 | moderate drought stress | 8.965 |
| SRR1811619 | moderate drought stress | 8.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.491 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.510 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.705 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.595 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.177 |
| SRR2868004 | Drought Stress (root) | 11.731 |
| SRR2967015 | Control (root) | 9.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.795 |
| SRR9715740 | Leaf | 12.377 |
| SRR9715741 | Leaf | 8.033 |
| SRR9715739 | Root | 2.554 |
| SRR9715742 | Root | 3.824 |
| SRR9715743 | Root | 3.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.701 |
| SRR8749028 | MeJA induced 9h | 8.342 |
| SRR8749029 | MeJA induced 9h | 10.694 |
| SRR8749030 | Uninduced | 4.222 |
| SRR8749031 | Uninduced | 4.733 |
| SRR8749032 | Uninduced | 3.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.687 |
| SRR8400027 | Control - Root | 13.686 |