Gene detail information of Glyur000188s00019471 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41475.1 | 2.00E-15 | Embryo-specific protein 3, (ATS3) |
| NR | XP_004516655.1 | 2.12E-109 | PREDICTED: uncharacterized protein LOC101500745 [Cicer arietinum] |
| trEMBL | tr|G7ZWX5|G7ZWX5_MEDTR | 1.00E-108 | Embryo-specific protein {ECO:0000313|EMBL:AES79258.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00188 | 7572 | 8834 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000188s00019471.1 | PF06232.6 | ATS3 | 34 | 172 | 1.70E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.234 |
| SRR1783600 | control | 2.306 |
| SRR1783602 | moderate drought stress | 2.202 |
| SRR1811619 | moderate drought stress | 2.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.769 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.025 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.162 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.036 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.817 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.466 |
| SRR2868004 | Drought Stress (root) | 13.970 |
| SRR2967015 | Control (root) | 12.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.049 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.256 |
| SRR9715739 | Root | 2.640 |
| SRR9715742 | Root | 3.416 |
| SRR9715743 | Root | 3.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.466 |
| SRR8400027 | Control - Root | 4.991 |