Gene detail information of Glyur000187s00024044 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | AFW70402.1 | 6.93E-07 | putative ribosomal protein S4 (RPS4A) family protein [Zea mays] |
| Swissprot | tr|Q93VH9|RS41_ARATH | 7.00E-08 | 40S ribosomal protein S4-1 |
| trEMBL | tr|A0A096TYG6|A0A096TYG6_MAIZE | 3.00E-07 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G469061_P01} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00187 | 241693 | 244217 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000187s00024044.1 | PF08071.7 | RS4NT | 39 | 63 | 6.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.445 |
| SRR1783600 | control | 0.424 |
| SRR1783602 | moderate drought stress | 1.224 |
| SRR1811619 | moderate drought stress | 1.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.127 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.449 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.016 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.009 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.755 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.902 |
| SRR2868004 | Drought Stress (root) | 0.757 |
| SRR2967015 | Control (root) | 1.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.289 |
| SRR9715740 | Leaf | 1.064 |
| SRR9715741 | Leaf | 2.011 |
| SRR9715739 | Root | 0.072 |
| SRR9715742 | Root | 0.707 |
| SRR9715743 | Root | 0.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.995 |
| SRR8749028 | MeJA induced 9h | 2.962 |
| SRR8749029 | MeJA induced 9h | 0.588 |
| SRR8749030 | Uninduced | 0.590 |
| SRR8749031 | Uninduced | 0.563 |
| SRR8749032 | Uninduced | 1.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.659 |
| SRR8400027 | Control - Root | 1.203 |